GBrowse Details

Vigan.10G160000.01

Basic Information:
Name: Vigan.10G160000.01
Multiple alignment
Variant Information
Position: Chr10:21826762..21831693 (+ strand)
Length: 4932
Functional Information:
Description: Similar to dolichyldiphosphatase 1-like. [XP_004509300.1, Cicer arietinum]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: catalytic activity (GO:0003824)
InterPro: Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.97,4.79,11.56,51.30,5.76,13.47,6.43,10.21
Arabidopsis thaliana homolog: AT5G66450.1
Automatic updates:
Name: NM_001255933 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative lipid phosphate phosphatase (LOC100791542), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:21826762..21826905 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr10:21826906..21827244 (+ strand)
Length: 339
Type: CDS
Position: Chr10:21829323..21829545 (+ strand)
Length: 223
Type: CDS
Position: Chr10:21830121..21830194 (+ strand)
Length: 74
Type: CDS
Position: Chr10:21831259..21831483 (+ strand)
Length: 225
Type: CDS
Position: Chr10:21831484..21831693 (+ strand)
Length: 210
Type: three_prime_UTR


>Vigan.10G160000.01
CAGAGAATGA ACTGGTTTGT TGGACTTTCC GTGGAGCGTC TTCCTTCATA GATAATAAAT ACCACAGAGA AAGACTAGCT
TTTGTGATGT TGGACTGTAG CCCCATCTTC TCCCATAAAC TAGAGAGGAT CTTTTTCCTC TCACATGGCG GCGGCTTCTT
CAATTTGCCA AGCTCCCTTC ACTCTTTTTC AGGGGTCAAA TTGTCTTAAA CGAAGAAAAT TGAAAAACAC TTCACTTCCT
CGTTGTTTTT CTCCTTCAAG ATCCTTACTT TGTAGTGGAT TTCTTTCAAG GAGACCTCTT TTGAGAAGGA ACTCGTTCTG
GGTATCGAAA ACTATGGATG AATCCGTGAG AACTTCTGCT TTCAGAGATG GAGAAGGGGA TGAAAACATC CAAGTGTTTG
AACAGGAAGC TTTCATCGAT GGACCATCCC CGTTTCAGTC AAAGTTTTTG TCGCATGAGG TGGAATACAA GCTCAATAAA
CTGAGCAAGT GGATAGTAAC TGCCCTCTTT GGTGGTTTCA TTCTTTGGAG GCATGATGCA GAAGCCTTAT GGTTTACCTC
AGGGTCAATT TTGAATGCAT TGCTTTCTGT TTTGCTCAAA CGTATACTGA ATCAGGAACG ACCTTCAACC CTGAAATCTG
ACCCGGGAAT GCCATCTTCA CATGCACAAT CCATATTCTT TGCTGTCTTC TTTGTTATTT TGTCAGGCGT AGAATGGCTT
GGGCTAAATG TATTTACCAT TGCCATGAGT GGATTGGTCC TGACATTTGG TTCTTTCTTT TCGTACCTGA GGGTGTCGCA
ACAGCTTCAT ACAGTGAACC AAGTGGTTGT TGGAGCTGTA ATTGGGTCCA TTTTCTCTAT TTTATGGTAC TGGCTGTGGA
ACGGTTTTAT ACTGGATGTT TTTGTATCTT CTCTATGGGT TAGAATCGTT GTTGTTTTGG GGTCTGTGGG ACTCTGCATA
GGTTTTGTTT TATTTACTAT TCGTTATTGG CTTCAAGATG ACTAGAAGAA CTTCAAGACG TGTAAAACAT TTCAATGCGT
TTTAATGTGT TAATGACACA TCTCATTTTC TTTCTTTCAA GATTAAGGTT TTATGTTATG TTGCCTGGTT ATGAAATGAA
ACATTTTGCG CCAATACTTT CTTGTAGTGA TGCCTGGTTT TCTATCTCTT GCTTTCTTAG TTAGCTCTGT TGCTTTTCCT
CGAAGCTTCT GGTTG

>Vigan.10G160000.01
ATGGCGGCGG CTTCTTCAAT TTGCCAAGCT CCCTTCACTC TTTTTCAGGG GTCAAATTGT CTTAAACGAA GAAAATTGAA
AAACACTTCA CTTCCTCGTT GTTTTTCTCC TTCAAGATCC TTACTTTGTA GTGGATTTCT TTCAAGGAGA CCTCTTTTGA
GAAGGAACTC GTTCTGGGTA TCGAAAACTA TGGATGAATC CGTGAGAACT TCTGCTTTCA GAGATGGAGA AGGGGATGAA
AACATCCAAG TGTTTGAACA GGAAGCTTTC ATCGATGGAC CATCCCCGTT TCAGTCAAAG TTTTTGTCGC ATGAGGTGGA
ATACAAGCTC AATAAACTGA GCAAGTGGAT AGTAACTGCC CTCTTTGGTG GTTTCATTCT TTGGAGGCAT GATGCAGAAG
CCTTATGGTT TACCTCAGGG TCAATTTTGA ATGCATTGCT TTCTGTTTTG CTCAAACGTA TACTGAATCA GGAACGACCT
TCAACCCTGA AATCTGACCC GGGAATGCCA TCTTCACATG CACAATCCAT ATTCTTTGCT GTCTTCTTTG TTATTTTGTC
AGGCGTAGAA TGGCTTGGGC TAAATGTATT TACCATTGCC ATGAGTGGAT TGGTCCTGAC ATTTGGTTCT TTCTTTTCGT
ACCTGAGGGT GTCGCAACAG CTTCATACAG TGAACCAAGT GGTTGTTGGA GCTGTAATTG GGTCCATTTT CTCTATTTTA
TGGTACTGGC TGTGGAACGG TTTTATACTG GATGTTTTTG TATCTTCTCT ATGGGTTAGA ATCGTTGTTG TTTTGGGGTC
TGTGGGACTC TGCATAGGTT TTGTTTTATT TACTATTCGT TATTGGCTTC AAGATGACTA G

>Vigan.10G160000.01
MAAASSICQA PFTLFQGSNC LKRRKLKNTS LPRCFSPSRS LLCSGFLSRR PLLRRNSFWV SKTMDESVRT SAFRDGEGDE
NIQVFEQEAF IDGPSPFQSK FLSHEVEYKL NKLSKWIVTA LFGGFILWRH DAEALWFTSG SILNALLSVL LKRILNQERP
STLKSDPGMP SSHAQSIFFA VFFVILSGVE WLGLNVFTIA MSGLVLTFGS FFSYLRVSQQ LHTVNQVVVG AVIGSIFSIL
WYWLWNGFIL DVFVSSLWVR IVVVLGSVGL CIGFVLFTIR YWLQDD*