GBrowse Details

Vigan.10G168500.01

Basic Information:
Name: Vigan.10G168500.01
Multiple alignment
Variant Information
Position: Chr10:22441755..22446002 (+ strand)
Length: 4248
Functional Information:
Description: Similar to Uncharacterized protein. [I1J8X6, Glycine max]
InterPro: TB2/DP1/HVA22-related protein (IPR004345)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:116.94,122.63,24.67,26.18,28.43,21.71,31.98,24.69
Arabidopsis thaliana homolog: AT4G36720.1
Automatic updates:
Name: NM_001252875 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max HVA22-like protein k-like (LOC100811809), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:22441755..22441893 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr10:22441894..22441929 (+ strand)
Length: 36
Type: CDS
Position: Chr10:22442216..22442274 (+ strand)
Length: 59
Type: CDS
Position: Chr10:22442368..22442465 (+ strand)
Length: 98
Type: CDS
Position: Chr10:22444184..22444235 (+ strand)
Length: 52
Type: CDS
Position: Chr10:22444473..22444536 (+ strand)
Length: 64
Type: CDS
Position: Chr10:22445338..22445433 (+ strand)
Length: 96
Type: CDS
Position: Chr10:22445510..22445582 (+ strand)
Length: 73
Type: CDS
Position: Chr10:22445664..22445776 (+ strand)
Length: 113
Type: CDS
Position: Chr10:22445777..22446002 (+ strand)
Length: 226
Type: three_prime_UTR


>Vigan.10G168500.01
CTCTGCCTCT CTTCGATTTC TTTTGGTGGT TAATGCTTTT GTTTTTTTAT AGGCGGTTAG TATTAAAACT GAAGCGTATA
AAGGCATGGA CGAATTGACC TAGCAAGTCG GAAGCGAAGG GAATGGTGCC TAGGGAACTA TGATGGATCT CCTCGGATCA
AACCTAACAA GCGAAGTTGG ACTCCGTTTG CTCCTTTGTC CTCTTGGTTC CAACGTCGTA ATTCGAACAG CATGTTGCGG
TGTCGGAGTT GCTTTGCCTG TTTACTCTAC GTTCAAGGCA ATAGAAAGTA AAGATCAAAA TGCTCAACAG AACTGTCTTT
TCTACTGGGC AGCCTATGGT TCATTCAGCC TTGTTGAAGT GTTCACAGAC AAGCTTATTT CGTGGTGTCC CATGTACTAT
CACATGAAGT TTGCATTTCT TGTCTGGCTT CAACTTCCAC CCACCAGTGG AGCAAAGCAA TTATATGCGA ACCACCTGCG
CCCCTTCTTG TCGAGGCATC AAGCGCGAGT TGATCAAGTG TTGGGTTTTG CATATTGTGA AGTGATCAAA CTGGTCAGTT
CATACCATGC AGAGATCAAG CTTGTCAAGA GCATGGTAGT AAAGATTACC GGATCAGCGG AAAAACTGCT GAGAGGCACT
GCTGAATCTG ATAGATCGCA ACAACATAGT TCTGCTGAAG ACCCTGCTGT GCCCTCTGAT ACTGAACCTG ACCAAAACCA
TAATCACTGA TTAGTGCCCC CAGGAAACCC CATGGACTGT AATAAGAGAG ACTAGACTTT TTAATTAGCT TTTTGAAGGT
AGTCAATATC AGGAATTTTG TAAATTTCAA TTTTTTATTC GAGTTTAGGA TAAAGTGAAA CTGTTCAGTG TAACGATAAA
GAAGTGAGAG AGTTAAAAAA ACAGAATAAT ATTATTTTAA TGTTATTATA GAAGATTTTA TGTGATTTTT CAATAA

>Vigan.10G168500.01
ATGATGGATC TCCTCGGATC AAACCTAACA AGCGAAGTTG GACTCCGTTT GCTCCTTTGT CCTCTTGGTT CCAACGTCGT
AATTCGAACA GCATGTTGCG GTGTCGGAGT TGCTTTGCCT GTTTACTCTA CGTTCAAGGC AATAGAAAGT AAAGATCAAA
ATGCTCAACA GAACTGTCTT TTCTACTGGG CAGCCTATGG TTCATTCAGC CTTGTTGAAG TGTTCACAGA CAAGCTTATT
TCGTGGTGTC CCATGTACTA TCACATGAAG TTTGCATTTC TTGTCTGGCT TCAACTTCCA CCCACCAGTG GAGCAAAGCA
ATTATATGCG AACCACCTGC GCCCCTTCTT GTCGAGGCAT CAAGCGCGAG TTGATCAAGT GTTGGGTTTT GCATATTGTG
AAGTGATCAA ACTGGTCAGT TCATACCATG CAGAGATCAA GCTTGTCAAG AGCATGGTAG TAAAGATTAC CGGATCAGCG
GAAAAACTGC TGAGAGGCAC TGCTGAATCT GATAGATCGC AACAACATAG TTCTGCTGAA GACCCTGCTG TGCCCTCTGA
TACTGAACCT GACCAAAACC ATAATCACTG A

>Vigan.10G168500.01
MMDLLGSNLT SEVGLRLLLC PLGSNVVIRT ACCGVGVALP VYSTFKAIES KDQNAQQNCL FYWAAYGSFS LVEVFTDKLI
SWCPMYYHMK FAFLVWLQLP PTSGAKQLYA NHLRPFLSRH QARVDQVLGF AYCEVIKLVS SYHAEIKLVK SMVVKITGSA
EKLLRGTAES DRSQQHSSAE DPAVPSDTEP DQNHNH*