VIGGS:GBrowse

Vigan.10G168700.01

Basic Information:

Name:	Vigan.10G168700.01 Multiple alignment Variant Information
Position:	Chr10:22467201..22469243 (- strand)
Length:	2043

Functional Information:

Description:	Similar to Uncharacterized protein. [I1J8X8, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Helix-turn-helix motif (IPR000047)
	Homeobox domain (IPR001356)
	Homeodomain-like (IPR009057)
	Homeobox, conserved site (IPR017970)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00
Arabidopsis thaliana homolog:	AT4G36740.1

Automatic updates:

Name:	KT031162 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_116 homeodomain/HOMEOBOX transcription factor (Glyma01g38390.1) mRNA, partial cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	KT031168 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_119 homeodomain/HOMEOBOX transcription factor (Glyma11g06940.1) mRNA, partial cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:22467201..22467338 (- strand)
Length:	138
Type:	three_prime_UTR

Position:	Chr10:22467339..22467584 (- strand)
Length:	246
Type:	CDS

Position:	Chr10:22468636..22468955 (- strand)
Length:	320
Type:	CDS

Position:	Chr10:22469036..22469126 (- strand)
Length:	91
Type:	CDS

Position:	Chr10:22469127..22469243 (- strand)
Length:	117
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G168700.01
CTCTTTTTAA GGAGAAGAAA ATAACATCAC ACACGCACAG ACACTGGTTT TGAGATCAAA ACCAGTGGAG AGCGATCGAG
CTAGTTTGCT AGGAACAACA TAACACACCG TACCACAATG AATCATCGAC CTTTCCAAGA CAACATGATG TTCATCCCTC
AGTTATACCC CGCCGATGCA CCATACACTC AAATAATTGC TCAACAAGGG GAGAGTAAGA AGCCAAAACG CCGTCGTGGT
AAGAAGAACA AAGGAGGAGA GAACGGTGCC TCCGAAGCCA ACAGGAAGAG GAAGCTCAGT GCCGAGCAAG TTAATCTACT
TGAGCAGAAC TTTGGAAATG AACATAAACT TGAGTCTGAG AGGAAAGACA GGCTCGCATT GGAGCTTGGT CTGGACCCTC
GACAAGTTGC AGTGTGGTTT CAAAACAGAA GAGCTCGCTG GAAGAACAAA AAACTAGAAG AAGAGTACTC ACACCTTAAA
AAATCCCACG AAGCCAACTT GCTCGAGAAA TGTCGATTGG AGACCGAGGT ATTGAAGCTG AAAGATCAAC TTTCTGAGGC
GGAGAAGGAG ATTCAGAGGC TGTTGGAGAG TGGTGATAGA GTTCCGAGTA ACAGCTCTAG CTCGTCACAG TCACAATCAC
AATCACAATC TATGGAAGCG GTGGACCCAG CATTCTTCGG GGTGTTCGGA GTTGATGGGT ATGATGATGA TGTGTTTTAC
GGGCCCGAGA CTCACTGCAT CAACGCCTTG GAATGGATTA ATCTGTATAT GTAAACAAAT AGGAGTTTAG AATTATGTAG
ATAATGTGAA TGATCCAATG TATATTGTTC CTAGCTAGGT AGCTAAGTGT GTTTGTTTGA CTATGGTTTG GAATTGGAAA
CTATCCATTA ACATAATATT TTGCATTTTG AC

[show][hide][copy]CDS

>Vigan.10G168700.01
ATGAATCATC GACCTTTCCA AGACAACATG ATGTTCATCC CTCAGTTATA CCCCGCCGAT GCACCATACA CTCAAATAAT
TGCTCAACAA GGGGAGAGTA AGAAGCCAAA ACGCCGTCGT GGTAAGAAGA ACAAAGGAGG AGAGAACGGT GCCTCCGAAG
CCAACAGGAA GAGGAAGCTC AGTGCCGAGC AAGTTAATCT ACTTGAGCAG AACTTTGGAA ATGAACATAA ACTTGAGTCT
GAGAGGAAAG ACAGGCTCGC ATTGGAGCTT GGTCTGGACC CTCGACAAGT TGCAGTGTGG TTTCAAAACA GAAGAGCTCG
CTGGAAGAAC AAAAAACTAG AAGAAGAGTA CTCACACCTT AAAAAATCCC ACGAAGCCAA CTTGCTCGAG AAATGTCGAT
TGGAGACCGA GGTATTGAAG CTGAAAGATC AACTTTCTGA GGCGGAGAAG GAGATTCAGA GGCTGTTGGA GAGTGGTGAT
AGAGTTCCGA GTAACAGCTC TAGCTCGTCA CAGTCACAAT CACAATCACA ATCTATGGAA GCGGTGGACC CAGCATTCTT
CGGGGTGTTC GGAGTTGATG GGTATGATGA TGATGTGTTT TACGGGCCCG AGACTCACTG CATCAACGCC TTGGAATGGA
TTAATCTGTA TATGTAA

[show][hide][copy]PROTEIN

>Vigan.10G168700.01
MNHRPFQDNM MFIPQLYPAD APYTQIIAQQ GESKKPKRRR GKKNKGGENG ASEANRKRKL SAEQVNLLEQ NFGNEHKLES
ERKDRLALEL GLDPRQVAVW FQNRRARWKN KKLEEEYSHL KKSHEANLLE KCRLETEVLK LKDQLSEAEK EIQRLLESGD
RVPSNSSSSS QSQSQSQSME AVDPAFFGVF GVDGYDDDVF YGPETHCINA LEWINLYM*