VIGGS:GBrowse

Vigan.10G177900.01

Basic Information:

Name:	Vigan.10G177900.01 Multiple alignment Variant Information
Position:	Chr10:23325659..23328115 (- strand)
Length:	2457

Functional Information:

Description:	Similar to Uncharacterized protein. [Q43457, Glycine max]
GO:	Biological Process: double-strand break repair (GO:0006302)
	Biological Process: DNA recombination (GO:0006310)
	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	DNA repair protein XRCC4, C-terminal (IPR014751)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:76.53,49.75,7.94,1.66,2.63,0.87,7.57,4.02

Automatic updates:

Name:	NM_001254668 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat shock factor (HSF), mRNA.
PubMed ID:	7579166 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:23325659..23325955 (- strand)
Length:	297
Type:	three_prime_UTR

Position:	Chr10:23325956..23326606 (- strand)
Length:	651
Type:	CDS

Position:	Chr10:23327294..23327497 (- strand)
Length:	204
Type:	CDS

Position:	Chr10:23327498..23328115 (- strand)
Length:	618
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G177900.01
TTAGAAAGTT CAGTTTAGAA AATGTAGGAA GTGAAAACGC AATTTGCACG AGAGAAAGCC AAAGACGACC CTTGTGAAAA
GCGTGTGTAA TGCTTCTCTT CTGCTGCCTC CTTATCCAAT CCACTGTTGT GTAAAGCAAA GTTTCTTCCC TGTTATTGCG
TACGTGTGGA TTGAGTTTTG GTTTGGTCCA AAATAAACAT TGCCATTTCT TTTATCTGTG TAAGTTTCTA AAAAATTCTA
GAACCCACAC GTCACATGGG TTGGAATATG TTTGGTTCCG TATTATATAA GAGTCTTTCT CGTCCTAGAA TCCTCGAGGA
GGAGAATAAC AAAAGTATTC ACGGTACTTT ATCCTTTTGT GTCGTGAAAT TATGGTAATT GATTTTCAGA TTTTGACTCA
TGGATTCTGA TCATTCCAGA AAACCTTCCA AAAACTTCCT TCACTCTCGC TTTTTCCTTT CTGGCTTTTA TTGCTGGGAT
TGGGAGTTTT TGACAGCTCT CCTCCTTTTC AGTTCTTCCT CCTAAATAAG TTCCCTCTTA CTCTATTTTT TTTTCTCTCT
CTCTATACTT TTTTATTTAG AATAATTGTA ATAAGAAGAG ATTTGTGAGG GTGAAATCAT GTCGCAACGA TCTGTGCCGG
CACCGTTTTT GACGAAGACG TATGAGTTGG TGGATGATCC AGGGACGAAC GAGGTGATAT CGTGGAGTGA CAGTGGGAAC
ACATTTGTTG TGTGGAAACA TGCGGAATTT GCCAAGGATT TGCTTCCTAA ATGTTTCAAG CACAATAACT TCTCCAGTTT
TGTTCGCCAG CTCAACACCT ACGGATTCCG AAAGATTGTG CCAGATAAAT GGGAATTCGC AAACGAACAT TTCAAGCGAG
GGCACAAGGA GCTTCTCTGC GACATTAAAC GCCGCAAGAC CGTGCCGCAA TTGCATGCGC TTCCACCGGA GGCCGGAAAA
TCCAGCGGGG GTGGTAACTC TCCGTTAAAC TCCGGCGGTG GAGATGACGC TGGGTCCACC TCTACCTCGT CCTCCTCCTC
CGGTTCGAAG AACACGGGGT TGGTGGAAAC AAACACAACA GCTTCTCATG AGTTATCGAG CGAGAACCAG AAACTGAAGA
AGGATAACGA AACGCTGAGT TGCGAGCTGG CACGTGCGAG GAAGCAGTGC GATGAGCTCG TTGCTTTTCT CAAGAACCGT
CTGATGGTGG GTCCTGATCA GATAGATCGC ATCATGCGGC AAGGAAGTTG CGGATCTGAG AAGGCGGTAG GTGAAGAAGG
TGGTGGGGAG TGTTTGAAAC TGTTTGGTGT TTGGTTGAAA GAGGATACAC TAGCAGACAA AAGAAACAAC AAGAACAAGA
GAGCGCGCGA AGACCAAATG GGCTTCGGTG GGCCTCGCCT CAAGAAGTCC AAGCCCGTTG TTGATTTTGA ACCTATAAAT
CTCATCATGA CTAGCAATAA GGTTTGCAAC TGACCAATCA ACGAACAAAG AACAATTGAT TTTTTCCTTT TAGGTAATTA
AGGAAGGAAT AGGATAATGA AAAAGTAAAA GGCTGAGCGA TAATTATGTT TGGGTAAAAA GACCAAATGC GACAGCCTCT
GCTCTACTTC CTCCACGTGT CTAGGTTGTG TTAATTTAAT TTTAAATTTA ATGATGTATA TACCTAGGTC AATCCTTGTA
TGATTGGAAA GCACATGTAC GCTATATGTT TTTATTTTTT TATGTAAGGC ATTCTGTAGC TTGGTTGATG TTAACGATTA
TGTTTGGATT

[show][hide][copy]CDS

>Vigan.10G177900.01
ATGTCGCAAC GATCTGTGCC GGCACCGTTT TTGACGAAGA CGTATGAGTT GGTGGATGAT CCAGGGACGA ACGAGGTGAT
ATCGTGGAGT GACAGTGGGA ACACATTTGT TGTGTGGAAA CATGCGGAAT TTGCCAAGGA TTTGCTTCCT AAATGTTTCA
AGCACAATAA CTTCTCCAGT TTTGTTCGCC AGCTCAACAC CTACGGATTC CGAAAGATTG TGCCAGATAA ATGGGAATTC
GCAAACGAAC ATTTCAAGCG AGGGCACAAG GAGCTTCTCT GCGACATTAA ACGCCGCAAG ACCGTGCCGC AATTGCATGC
GCTTCCACCG GAGGCCGGAA AATCCAGCGG GGGTGGTAAC TCTCCGTTAA ACTCCGGCGG TGGAGATGAC GCTGGGTCCA
CCTCTACCTC GTCCTCCTCC TCCGGTTCGA AGAACACGGG GTTGGTGGAA ACAAACACAA CAGCTTCTCA TGAGTTATCG
AGCGAGAACC AGAAACTGAA GAAGGATAAC GAAACGCTGA GTTGCGAGCT GGCACGTGCG AGGAAGCAGT GCGATGAGCT
CGTTGCTTTT CTCAAGAACC GTCTGATGGT GGGTCCTGAT CAGATAGATC GCATCATGCG GCAAGGAAGT TGCGGATCTG
AGAAGGCGGT AGGTGAAGAA GGTGGTGGGG AGTGTTTGAA ACTGTTTGGT GTTTGGTTGA AAGAGGATAC ACTAGCAGAC
AAAAGAAACA ACAAGAACAA GAGAGCGCGC GAAGACCAAA TGGGCTTCGG TGGGCCTCGC CTCAAGAAGT CCAAGCCCGT
TGTTGATTTT GAACCTATAA ATCTCATCAT GACTAGCAAT AAGGTTTGCA ACTGA

[show][hide][copy]PROTEIN

>Vigan.10G177900.01
MSQRSVPAPF LTKTYELVDD PGTNEVISWS DSGNTFVVWK HAEFAKDLLP KCFKHNNFSS FVRQLNTYGF RKIVPDKWEF
ANEHFKRGHK ELLCDIKRRK TVPQLHALPP EAGKSSGGGN SPLNSGGGDD AGSTSTSSSS SGSKNTGLVE TNTTASHELS
SENQKLKKDN ETLSCELARA RKQCDELVAF LKNRLMVGPD QIDRIMRQGS CGSEKAVGEE GGGECLKLFG VWLKEDTLAD
KRNNKNKRAR EDQMGFGGPR LKKSKPVVDF EPINLIMTSN KVCN*