GBrowse Details

Vigan.10G179800.01

Basic Information:
Name: Vigan.10G179800.01
Multiple alignment
Variant Information
Position: Chr10:23485323..23487040 (+ strand)
Length: 1718
Functional Information:
Description: Similar to Caffeoyl-CoA O-methyltransferase 2. [Q9SWB8, Eucalyptus globulus]
GO: Molecular Function: O-methyltransferase activity (GO:0008171)
InterPro: O-methyltransferase, family 3 (IPR002935)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.63,0.00,36.27,0.61,15.57,0.07
Structure :
Position: Chr10:23485323..23485452 (+ strand)
Length: 130
Type: five_prime_UTR
Position: Chr10:23485453..23485548 (+ strand)
Length: 96
Type: CDS
Position: Chr10:23485637..23485716 (+ strand)
Length: 80
Type: CDS
Position: Chr10:23485803..23485947 (+ strand)
Length: 145
Type: CDS
Position: Chr10:23486049..23486180 (+ strand)
Length: 132
Type: CDS
Position: Chr10:23486305..23486598 (+ strand)
Length: 294
Type: CDS
Position: Chr10:23486599..23487040 (+ strand)
Length: 442
Type: three_prime_UTR


>Vigan.10G179800.01
GAAGCTTCAA CTTACCAACC CCATAACAAC CCATTGACAT TTGCACTTAG CTTCTATATA TAACAGGTTT TGGCCATTGT
TTACCTTAAG CAAATATTCA GAGAATAAAT CCCATAGGCA GATATCAATC ATGACTATCA CCAACGAAGA CCAACAACAA
ATTCAAATAC CTGGCCACAA ACATCTCCGT CACAAGAGTC TCCTTCAGAG CGATGCACTC TATCAGTATA TACTTGAGAC
CAGTGTATAC CCAAGAGAGC ACGAGAGCTT GAAGGAGCTA CGCGAGTTGA CGGAAAAACA CCCTTGGAAC CTCTTAGCTA
CACCACCTGA CGAAGGACAA CTTCTAAGGA TGTTACTGAA GGTGATCAAT GCGAAGAACA CCATGGAGAT TGGCGTCTAC
ACCGGTTACT CCTTGCTTTC CACTGCCCTC GCTCTTCCGT CTGATGGAAA GATCCTGGCA ATGGATATTA GCAGGGAATA
TTATGAACTG GGGTTGCCTG TGATTGAAAA GGCAGGAGTG GCTCACAAGA TTGACTTCAG AGAAGGTCCA GCACTTCCTC
TTCTTGATCA ACTCATCAAA GACGAAAAGA ACAAGGGAAG CTTCGATTTC ATCTTCGTCG ATGCTGATAA GGATAACTAC
TTGAACTATC ACAATAGGGT GATTGAGCTT GTCAAGATTG GGGGAATGAT CGCCTACGAT AACACCCTGT GGAACGGCTC
TGTGGCCGCC CCATCCGATG CTCCTCTCTT GGATTATATT AAGTATTATC GCGATTTTGT GATAGAGCTG AATCAAGCAC
TTGCACTTGA TTCAAGGGTC GAGATTTGCC AGCTTCCCGT TGGTGACGGC ATTACACTGT GCCGCCGCAT CATCTGATCA
CTCTGCTCCT TTTACCCGCA ACATACGGAA AAACACGAGT TTCAACTATG TTACCTAATC CATGAATAAA ATAATGTGTG
CCTGCTTGGA TGAATTTGAA TTTTTGTCTT GTAAGCGAAT ACATTCATAA CGTGTCTCTT CCTCAACACA ATACACATGT
ATTCATTCCA AATCATATTT ACGATATATT TATATATAGT GTGTAGTGGA GTAATAATAA GTTCAATTAT ATATAATATG
GTGGCATGGA TCTTCCTTCT GCAGTCCCTT TTTTTTTCTT TCTGCACCCC ATAAAAGTTG TAATACTCCT TATTGGAATT
TTTACTCTGT TAGTATGGGG TGACAATTAG TAATAATAAT AATGAGGTCT AGGAATAAAA AAGCCCTTTC GTATAATCAA
GAGAGCCCTG ATAGTATTTG GTTTTGGGCT ATATTTGAG

>Vigan.10G179800.01
ATGACTATCA CCAACGAAGA CCAACAACAA ATTCAAATAC CTGGCCACAA ACATCTCCGT CACAAGAGTC TCCTTCAGAG
CGATGCACTC TATCAGTATA TACTTGAGAC CAGTGTATAC CCAAGAGAGC ACGAGAGCTT GAAGGAGCTA CGCGAGTTGA
CGGAAAAACA CCCTTGGAAC CTCTTAGCTA CACCACCTGA CGAAGGACAA CTTCTAAGGA TGTTACTGAA GGTGATCAAT
GCGAAGAACA CCATGGAGAT TGGCGTCTAC ACCGGTTACT CCTTGCTTTC CACTGCCCTC GCTCTTCCGT CTGATGGAAA
GATCCTGGCA ATGGATATTA GCAGGGAATA TTATGAACTG GGGTTGCCTG TGATTGAAAA GGCAGGAGTG GCTCACAAGA
TTGACTTCAG AGAAGGTCCA GCACTTCCTC TTCTTGATCA ACTCATCAAA GACGAAAAGA ACAAGGGAAG CTTCGATTTC
ATCTTCGTCG ATGCTGATAA GGATAACTAC TTGAACTATC ACAATAGGGT GATTGAGCTT GTCAAGATTG GGGGAATGAT
CGCCTACGAT AACACCCTGT GGAACGGCTC TGTGGCCGCC CCATCCGATG CTCCTCTCTT GGATTATATT AAGTATTATC
GCGATTTTGT GATAGAGCTG AATCAAGCAC TTGCACTTGA TTCAAGGGTC GAGATTTGCC AGCTTCCCGT TGGTGACGGC
ATTACACTGT GCCGCCGCAT CATCTGA

>Vigan.10G179800.01
MTITNEDQQQ IQIPGHKHLR HKSLLQSDAL YQYILETSVY PREHESLKEL RELTEKHPWN LLATPPDEGQ LLRMLLKVIN
AKNTMEIGVY TGYSLLSTAL ALPSDGKILA MDISREYYEL GLPVIEKAGV AHKIDFREGP ALPLLDQLIK DEKNKGSFDF
IFVDADKDNY LNYHNRVIEL VKIGGMIAYD NTLWNGSVAA PSDAPLLDYI KYYRDFVIEL NQALALDSRV EICQLPVGDG
ITLCRRII*