GBrowse Details

Vigan.10G179900.01

Basic Information:
Name: Vigan.10G179900.01
Multiple alignment
Variant Information
Position: Chr10:23492449..23495261 (+ strand)
Length: 2813
Functional Information:
Description: Similar to F-box protein. [G7K5B9, Medicago truncatula]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
Leucine-rich repeat, cysteine-containing subtype (IPR006553)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.03,5.18,8.94,6.95,2.52,17.32,1.94
Arabidopsis thaliana homolog: AT5G67140.1
Automatic updates:
Name: NM_001250113 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306324 (LOC100306324), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:23492449..23492721 (+ strand)
Length: 273
Type: five_prime_UTR
Position: Chr10:23492722..23492810 (+ strand)
Length: 89
Type: CDS
Position: Chr10:23492910..23493056 (+ strand)
Length: 147
Type: CDS
Position: Chr10:23493840..23493975 (+ strand)
Length: 136
Type: CDS
Position: Chr10:23494521..23494619 (+ strand)
Length: 99
Type: CDS
Position: Chr10:23494843..23495007 (+ strand)
Length: 165
Type: CDS
Position: Chr10:23495008..23495261 (+ strand)
Length: 254
Type: three_prime_UTR


>Vigan.10G179900.01
CAAAAACAAA AATAGATAAT GAATGAAGAG AAAAGTTCCG TGAACACAGT AAGGAAGGAC GTGACAATAA AAAGGGATGA
CGAAAACATG AGGACACTTT TCAGTTTCCT TGTTGGCTGT ATTATTATAT ATTTCTGACA GAAAACACTT TTCATAAGAA
CAGAACAGAG AGTTTAAGGT TATTTCAGGG TGAAGGTTCT GTGGTGTTTG TGAAGGTTCT GTGGTGTTTG TGAAGGTTAT
TTTGGGTTTG TGATTGGTCA GTGAGAGGAT CTAATGGAAG TTGAGGCAGA GATTGATCGC TTGCCCGTTG ACTTGTTGGC
TAATATTTTT GTTCTTTTCA CTTCCTTCAC TGATTTGGCA CAAGCGAGCG AGGTTTGCAA GAAATGGAAA CAAGGGGTGA
ATGAGTCTCT GGCATGCAGA GAGAATCTCA GCTTTGCAGG TTGGAAAATG GATGATGAAT CCACTGCTCG TCTTGTTTGT
CATGCCTACA ATCTCACCAA ACTTCATATA CCAAGAAGCC GTTGGTGTTG CCAAATAACT GATGCAGGAC TTGTCAGAAT
ATCTTTTGCT AAGTGTGTCA GCAATCTCAC ATCTATATCA TTGTGGGGTT TGACTGGCAT CACAGATGAA GGTGTTGTTC
AACTGATATC CAGAACTAGA TCTTTACAAC ATCTGAATGT TGGTGGTACA TTTATCACGG ATGAATCTCT GTTTGCCATT
GCAAGAAGTT GTCCAAAGTT GGAGACCATT GTTCTTTGGA GCTGTCGCCA TGTAACTGAG AATGGGCTTT TTGCCTTAGT
TGACAAATGT GTGGAGCTGA AATCAATGAA TTTATGGGGA ACAAGAGTTC CTGTGGACTG CCTCAACAAT CTACTTGTTT
TAAGACCAGC ACTTATGATC AAAGTTTGAA ACTAGACTAA ATGTATAGAA TGGTCTCCCT GGTTGTTTTC TACTGCTATT
TTTATGTACA GATTGTTTCG TTTTTCAATT CATAGATTCA ATTCAACATG CCTCAAAAGC TGAATATGTC AAAATCCATT
TCTGCAAGTA GCTATTGCTG TAAAGTTCAA TTCACAAAAA CAAAGTCATG AGTAAAGAAA GATTATTGAA CTGTATCTAT
TCATTTACCG ACTTATGTTA ATTGTTACAC TGTCTCTGTA TAT

>Vigan.10G179900.01
ATGGAAGTTG AGGCAGAGAT TGATCGCTTG CCCGTTGACT TGTTGGCTAA TATTTTTGTT CTTTTCACTT CCTTCACTGA
TTTGGCACAA GCGAGCGAGG TTTGCAAGAA ATGGAAACAA GGGGTGAATG AGTCTCTGGC ATGCAGAGAG AATCTCAGCT
TTGCAGGTTG GAAAATGGAT GATGAATCCA CTGCTCGTCT TGTTTGTCAT GCCTACAATC TCACCAAACT TCATATACCA
AGAAGCCGTT GGTGTTGCCA AATAACTGAT GCAGGACTTG TCAGAATATC TTTTGCTAAG TGTGTCAGCA ATCTCACATC
TATATCATTG TGGGGTTTGA CTGGCATCAC AGATGAAGGT GTTGTTCAAC TGATATCCAG AACTAGATCT TTACAACATC
TGAATGTTGG TGGTACATTT ATCACGGATG AATCTCTGTT TGCCATTGCA AGAAGTTGTC CAAAGTTGGA GACCATTGTT
CTTTGGAGCT GTCGCCATGT AACTGAGAAT GGGCTTTTTG CCTTAGTTGA CAAATGTGTG GAGCTGAAAT CAATGAATTT
ATGGGGAACA AGAGTTCCTG TGGACTGCCT CAACAATCTA CTTGTTTTAA GACCAGCACT TATGATCAAA GTTTGA

>Vigan.10G179900.01
MEVEAEIDRL PVDLLANIFV LFTSFTDLAQ ASEVCKKWKQ GVNESLACRE NLSFAGWKMD DESTARLVCH AYNLTKLHIP
RSRWCCQITD AGLVRISFAK CVSNLTSISL WGLTGITDEG VVQLISRTRS LQHLNVGGTF ITDESLFAIA RSCPKLETIV
LWSCRHVTEN GLFALVDKCV ELKSMNLWGT RVPVDCLNNL LVLRPALMIK V*