GBrowse Details

Vigan.10G181000.01

Basic Information:
Name: Vigan.10G181000.01
Multiple alignment
Variant Information
Position: Chr10:23608026..23618497 (- strand)
Length: 10472
Functional Information:
Description: Similar to Uncharacterized protein. [I1J996, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
Molecular Function: SUMO ligase activity (GO:0019789)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
SUMO-conjugating enzyme Ubc9 (IPR027230)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.37,39.43,33.76,39.58,48.77,66.15,40.13,41.66
Arabidopsis thaliana homolog: AT3G57870.1
Automatic updates:
Name: NM_001248051 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305922 (LOC100305922), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:23608026..23609178 (- strand)
Length: 1153
Type: three_prime_UTR
Position: Chr10:23609179..23609241 (- strand)
Length: 63
Type: CDS
Position: Chr10:23609755..23609868 (- strand)
Length: 114
Type: CDS
Position: Chr10:23609980..23610132 (- strand)
Length: 153
Type: CDS
Position: Chr10:23617901..23617984 (- strand)
Length: 84
Type: CDS
Position: Chr10:23618090..23618155 (- strand)
Length: 66
Type: CDS
Position: Chr10:23618156..23618497 (- strand)
Length: 342
Type: five_prime_UTR


>Vigan.10G181000.01
GGGGCATAAT AGCGTGATTC TCACGCGTGA TAAGGAAGAG AGTTTTTGAA TCCCTGACGG AGAGAGAATA TAAAGGGACA
GTTTTAGATG AATTCAAGAG CGTTGGTTTT ATTGTAGAGA GAAGGAAGCG GTGCAGAAAA CAGAGTTTGT TGAGTTGGTG
TTGTATTTGT AGTGGAAGCA ACTATAGGTG CAGAGAGGGA GGGTTTGGTA AAATCAATTG TTTATACTAT TTACTCATCC
AACAAACAAA GATATATAAA GTCAGAAAAA TCATCTTTTT CATTCTTGTT TCTCTACTCT GCTTCTTCAG GTTTTAGGAG
CGGAGAATTC ACACACCGAA ACATGTCTGG CATCGCCCGT GGACGTCTTG CTGAGGAGCG AAAATCTTGG CGGAAGAACC
ATCCACATGG TTTCGTTGCC AAACCGGAGA CCCTCCCTGA TGGCACCGTC AATTTGATGG TCTGGCATTG CACTATTCCT
GGCAAGACTG GGACTGATTG GGAGGGTGGA TATTTCCCAC TGACAATGCA TTTCAGTGAA GATTACCCTA GCAAGCCTCC
AAAGTGTAAA TTCCCTCAAG GTTTCTTTCA CCCTAATGTG TATCCATCTG GAACTGTTTG CTTGTCTATA CTTAATGAAG
ATAGTGGGTG GAGACCAGCT ATAACAGTGA AGCAGATTCT TGTGGGCATC CAAGACCTGC TTGATCAACC TAATCCTGCT
GACCCTGCCC AGACAGAGGG TTATCATCTA TTCATCCAGG ATGCGACTGA ATATAAGAGA AGAGTCCGGC AGCAGGCAAA
GCAATATCCA CCTCTTGTCT AGTTCTATGT TTGTTCACTT TAGGAAACTA TTCTAGTATG TTAGTTGTTG TCAGTTATTT
ATTGTTCCGT GTTGAAACTG TTATGTGATT GTTAGCTGCC ATAATATGCA GACTCCATGG TTTTAATTGT TTCTGCTTAC
TCTCAGGTCT GGATAACGTG TTAATATATT ACAATGTGAA AGTCAACCAA TAATACTTGT TGGCGACACT TTCTGTGCCT
CATGTTAGCT GGTACATTTC GATGTGAATG GATAATTTAC TGTGATGAAT TATATGATAT TATGACTCCT ACCGTGGTAC
TTTCTATTCA GAAAATTTGT TGTTTCTATA CTGGATATCA AATCTAGACC TATTAGCCAA TTGATTTGTC ATTTTTCACC
TGTATCCATG TCCAATTGCA GTACAAATTA TCACTGAAAA TTTTCTATTT AAGTGACGGC ACTTGCCGAA TGGGGGACTC
ATTATATGCT AGTTATTCAC GGTGTTGAGA GGTATGGCTT ATGTATGACG TAAATTCACG CGATGATACC TGAATGTGAT
TTGAATCTTA GAAAGGGAAG TGGAATTGCT ACAATTGATG TTATTGCCTG GCTACTATAT TTTTAGCTCG AAATGCTTAT
ATTCTAATTA CTGAAGATCA ATTAGCCTTT TTGTATTATT GCTTTGAATG GCTTATTATT GATGCTGAAA TGTAACTGGA
ATAAGTAAGC TTCCCATTTC TGGTGAGTGC TGCCTCCCAG TTTATAAATT ATAGAAAGAT ATATGAGCAG AGCCTTCGAT
GTAAAAGTAC CAGAGACTCT ATATTAGGTT GGATATGGTC CAGTTCTTAG ACGCAGTTCA AGTGACACAG ACGAATGTGT
TTTAATTAAA AAATAAATAT AACAAAATAA TAAAATTAAG AAAAAATAAT GTACTAATAT CGTGCCTTTA TAAATCTTGA
CAGCTCTCCG ACGCTTCCAT TCTAGTGGAG TGAGCCACAC CTCCACCAGG TCTCTCCATT CTTGACGGAA GAGAAAGGTC
GCTGTGCATT GTAATTTTTA TCGACTTGTG TTTTTTTTTA CACTTTTGAC CCAACTTATT GTATAATTAT ATTATTCTGT
GTTCCTTTTT ATTCTTAATT TGAATCACTG GTTTTTTATT CTCATTTGAA TCAAA

>Vigan.10G181000.01
ATGTCTGGCA TCGCCCGTGG ACGTCTTGCT GAGGAGCGAA AATCTTGGCG GAAGAACCAT CCACATGGTT TCGTTGCCAA
ACCGGAGACC CTCCCTGATG GCACCGTCAA TTTGATGGTC TGGCATTGCA CTATTCCTGG CAAGACTGGG ACTGATTGGG
AGGGTGGATA TTTCCCACTG ACAATGCATT TCAGTGAAGA TTACCCTAGC AAGCCTCCAA AGTGTAAATT CCCTCAAGGT
TTCTTTCACC CTAATGTGTA TCCATCTGGA ACTGTTTGCT TGTCTATACT TAATGAAGAT AGTGGGTGGA GACCAGCTAT
AACAGTGAAG CAGATTCTTG TGGGCATCCA AGACCTGCTT GATCAACCTA ATCCTGCTGA CCCTGCCCAG ACAGAGGGTT
ATCATCTATT CATCCAGGAT GCGACTGAAT ATAAGAGAAG AGTCCGGCAG CAGGCAAAGC AATATCCACC TCTTGTCTAG


>Vigan.10G181000.01
MSGIARGRLA EERKSWRKNH PHGFVAKPET LPDGTVNLMV WHCTIPGKTG TDWEGGYFPL TMHFSEDYPS KPPKCKFPQG
FFHPNVYPSG TVCLSILNED SGWRPAITVK QILVGIQDLL DQPNPADPAQ TEGYHLFIQD ATEYKRRVRQ QAKQYPPLV*