GBrowse Details

Vigan.10G187300.01

Basic Information:
Name: Vigan.10G187300.01
Multiple alignment
Variant Information
Position: Chr10:24150798..24160827 (+ strand)
Length: 10030
Functional Information:
Description: Similar to VDAC2.1. [Q6W2J2, Lotus japonicus]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: mitochondrial outer membrane (GO:0005741)
InterPro: Porin domain (IPR023614)
Eukaryotic porin/Tom40 (IPR027246)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.77,19.18,36.53,33.98,34.32,48.02,45.81,30.87
Arabidopsis thaliana homolog: AT5G67500.2
Automatic updates:
Name: NM_001252970 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial outer membrane protein porin of 34 kDa-like (LOC100790578), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254224 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial outer membrane protein porin of 34 kDa-like (LOC100818855), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:24150798..24151018 (+ strand)
Length: 221
Type: five_prime_UTR
Position: Chr10:24151019..24151067 (+ strand)
Length: 49
Type: CDS
Position: Chr10:24151175..24151242 (+ strand)
Length: 68
Type: CDS
Position: Chr10:24159248..24159358 (+ strand)
Length: 111
Type: CDS
Position: Chr10:24159440..24159526 (+ strand)
Length: 87
Type: CDS
Position: Chr10:24159613..24159821 (+ strand)
Length: 209
Type: CDS
Position: Chr10:24159923..24160229 (+ strand)
Length: 307
Type: CDS
Position: Chr10:24160230..24160827 (+ strand)
Length: 598
Type: three_prime_UTR


>Vigan.10G187300.01
CGCGGGCACG ATGGTCCCAC GCATCACATT CGCTTCCTAA ATCAACGGCT AGAAACGCAC GATCTGACAT AGCCGGTTCA
ACCATCCAGA TTCGCGATTT CTCTATTACA TTATTTCACG TTTAAAATAA AAACGTGAAA AAAGGGCGTC ATTTCCTCGC
CACACCCTGT TTCGTGAAGC GTAGTGCATC AAGATCTCTC TATCTCTCTC TGAAATCGAA AATGAGCAAG GGACCTGGTC
TCTTCACCGA TATCGGCAAA AAAGCCAAAG ATCTTTTGAC TAAGGACTAC ACCTCCGATA GGAAACTCAC AGTTTCATCC
TATAGCAGCG CCGGAGTTGC GCTCACTTCA ACTGCTGTGA AGAAAGGAGG ACTCTCGACT GGGGATGTGG CAGCACTGTA
CAAGTATAAG AACACTATTA TTGATGTTAA ACTTGACACG GCATCCATTA TCTCCACAAC CCTCACATTC ACTGACATTA
TGCCGTCCAC CAAGACTATT GCTTCGATTA AGCTGCCTGA TTATAATTCT GGCAAGCTAG AGGTTCAATA CTTCCATGAC
CATGCTACCT TGACAACCGC TTTTGCTTTG AATCAATCCC CTGTCATTGA TGTTTCTGCT ACCGTTGGTA CCCCAAGCAT
TGCTTTCGGT GGTGAGGCAG GCTATGACAC TACATCTGGT CGTTTTACAA AATACACTGC TGGGATTAGT GTCACGAAAG
CAGATTCATC TGCTTCAATA ATCCTAGGTG ACAAGGGTGA CAGCATTAAA GCATCATACG TCCATCATCT GGACCTATTG
AAGAAGAGTG CTGCTGTTGC AGAGGTCACT AGAAAGTTCT CCACAAATGA GAACATTCTT ACAGTGGGAG GGTCTTTTGC
TGTTGACCCT CTGACACAGG TCAAAGCAAG GTTCAACAAT CAAGGACATC TTGGCGCCCT CTTGCAGCAT GAGATCATAC
CAAAATCAGT GTTGACTATT TCTGGTGAGA TCGACACCAA GGCCCTGGAT AAAAAACCCA GGTTTGGATT GGGTGTTGCC
CTCAAACCGT GAGGCTTGTG TTCATTTTTA GAAAAGTGAT CGGAGTTACA AACTTCATTC AATTTTTTTG ATGGCCCTTG
AAAGGAGGGA AAAATAATTA GCTCCACAGA TGAGCATTTC TAGGCTCTTC ATGAATGGAT AAAAATCTTA TAATTCGAAT
CCTCGAGTGT TTTTTGTTTC CCCTTTTTTT TTATTGAACT TTCTGCTTTT CCTCCAACAT TGTGGTAGGC ATTACAAGAT
CTAGAGGTCA TGTTGTCTAG GAGGATTTTA TCGAGTGTGC TTTTCTTACA ATTTTACTTT AAATTTTTCT CTTGGATAAC
TTCCATACCC CTTCAATATT GTTAGTCTTT CAGTGAATTG GGTTCAAAGA AGGGAAGAGG AGGGGAAGGA AAATGATCAC
CTTATTTGGT CCAAGTATAA GTGTACGAGA GGAGAAATAT AATATATTGT TGTGCTCCAT AAAATATTAA TGGAGAGGGT
GAGTCGAAAG ACTTTAGGAT AATTTAGTTG GTACAATCTA AATTACACAG GACTGTCGTC TTCCAAAAAT AAGATAACAT
TACTTTATGG TTCTCATTTT AATTCTCGTC TTCCAAAATT TATATCTAAA 

>Vigan.10G187300.01
ATGAGCAAGG GACCTGGTCT CTTCACCGAT ATCGGCAAAA AAGCCAAAGA TCTTTTGACT AAGGACTACA CCTCCGATAG
GAAACTCACA GTTTCATCCT ATAGCAGCGC CGGAGTTGCG CTCACTTCAA CTGCTGTGAA GAAAGGAGGA CTCTCGACTG
GGGATGTGGC AGCACTGTAC AAGTATAAGA ACACTATTAT TGATGTTAAA CTTGACACGG CATCCATTAT CTCCACAACC
CTCACATTCA CTGACATTAT GCCGTCCACC AAGACTATTG CTTCGATTAA GCTGCCTGAT TATAATTCTG GCAAGCTAGA
GGTTCAATAC TTCCATGACC ATGCTACCTT GACAACCGCT TTTGCTTTGA ATCAATCCCC TGTCATTGAT GTTTCTGCTA
CCGTTGGTAC CCCAAGCATT GCTTTCGGTG GTGAGGCAGG CTATGACACT ACATCTGGTC GTTTTACAAA ATACACTGCT
GGGATTAGTG TCACGAAAGC AGATTCATCT GCTTCAATAA TCCTAGGTGA CAAGGGTGAC AGCATTAAAG CATCATACGT
CCATCATCTG GACCTATTGA AGAAGAGTGC TGCTGTTGCA GAGGTCACTA GAAAGTTCTC CACAAATGAG AACATTCTTA
CAGTGGGAGG GTCTTTTGCT GTTGACCCTC TGACACAGGT CAAAGCAAGG TTCAACAATC AAGGACATCT TGGCGCCCTC
TTGCAGCATG AGATCATACC AAAATCAGTG TTGACTATTT CTGGTGAGAT CGACACCAAG GCCCTGGATA AAAAACCCAG
GTTTGGATTG GGTGTTGCCC TCAAACCGTG A

>Vigan.10G187300.01
MSKGPGLFTD IGKKAKDLLT KDYTSDRKLT VSSYSSAGVA LTSTAVKKGG LSTGDVAALY KYKNTIIDVK LDTASIISTT
LTFTDIMPST KTIASIKLPD YNSGKLEVQY FHDHATLTTA FALNQSPVID VSATVGTPSI AFGGEAGYDT TSGRFTKYTA
GISVTKADSS ASIILGDKGD SIKASYVHHL DLLKKSAAVA EVTRKFSTNE NILTVGGSFA VDPLTQVKAR FNNQGHLGAL
LQHEIIPKSV LTISGEIDTK ALDKKPRFGL GVALKP*