GBrowse Details

Vigan.10G188200.01

Basic Information:
Name: Vigan.10G188200.01
Multiple alignment
Variant Information
Position: Chr10:24220009..24222933 (+ strand)
Length: 2925
Functional Information:
Description: Similar to Uncharacterized protein. [G7K2H2, Medicago truncatula]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:62.81,13.68,9.06,7.20,14.28,12.67,19.45,11.25
Automatic updates:
Name: NM_001249202 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor-like protein 8a (LOC100499793), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254204 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor-like protein 8A-like (LOC100776101), transcript variant 1, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:24220009..24220169 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr10:24220170..24220207 (+ strand)
Length: 38
Type: CDS
Position: Chr10:24220988..24221069 (+ strand)
Length: 82
Type: CDS
Position: Chr10:24221174..24221206 (+ strand)
Length: 33
Type: CDS
Position: Chr10:24221325..24221446 (+ strand)
Length: 122
Type: CDS
Position: Chr10:24222215..24222376 (+ strand)
Length: 162
Type: CDS
Position: Chr10:24222518..24222635 (+ strand)
Length: 118
Type: CDS
Position: Chr10:24222636..24222933 (+ strand)
Length: 298
Type: three_prime_UTR


>Vigan.10G188200.01
AAAGAGTAGA AAGGGAGGGA GGGAAGAATA GGTTTGAGAG AGAAAAGGCT AATTGGATTG CATTTCTCTC TCTTTTTGGT
AGACCAAGAG GGAAATAGGA GATCTGATTT CTTTCTCCCT TTGCATAATT TTGCGATCAG AATTGTCTTC AAGAAAAACC
AATGGGATTG TGGGAAGCTT TTCTCAATTG GCTTCGCAGC CTATTCTTCA AGCAGGAGAT GGAGTTATCT CTGATTGGAC
TTCAGAATGC TGGAAAGACT TCCCTTGTAA ATGTAGTCGC TACTGGTGGC TATAGTGAAG ACATGATTCC TACTGTGGGA
TTCAATATGA GGAAAGTGAC AAAAGGGAAT GTTACAATAA AGTTATGGGA TCTTGGTGGG CAGCCAAGGT TCCGCAGCAT
GTGGGAACGT TACTGTCGTG CGGTTTCTGC TATTGTTTAT GTTGTTGATG CTGCCGATGC AGATAATCTT AGCATATCAA
GAAGTGAGCT TCATGATTTG CTGAGCAAAC CATCATTGAG TGGCATTCCT TTGTTGGTAT TGGGGAACAA GATTGACAAA
CCAGGCGCTC TGTCTAAGCA AGCATTGACT GACCAAATGG AATTGAAGTC AATCATTGAC AGGGAAGTTT GCTGCTTCAT
GATCTCGTGC AAAAACTCGA CGAACATTGA CTCTGTTATA GACTGGCTTG TAAAGCATTC CAAATCGAAG AGCTGAACTG
CTTCTTTCTA TTTTGAACTC TAGTGTAATT TATGGTTGAT ACATTTATGG ATTTACTAGA GGCGTTTGCA TGTCTAACTC
AGTTGCTGAT TGGTTTATTT TCCTTTTGTC AGATGCTTTG TAATATAATA TCATTCTTGT CCGGTAGGTA AGTAATCAAA
CGGGATGACA TACATGGGAA AGGTTACATT ATGAGTAAAT CAGTGTGTCA TAGGCTTAGC CACATCATTA AAATTCATTG
AACTGCATTT GCGATGAATA TATGTTCTTT TATCTTTCTA ACTCTGGATT TGAT

>Vigan.10G188200.01
ATGGGATTGT GGGAAGCTTT TCTCAATTGG CTTCGCAGCC TATTCTTCAA GCAGGAGATG GAGTTATCTC TGATTGGACT
TCAGAATGCT GGAAAGACTT CCCTTGTAAA TGTAGTCGCT ACTGGTGGCT ATAGTGAAGA CATGATTCCT ACTGTGGGAT
TCAATATGAG GAAAGTGACA AAAGGGAATG TTACAATAAA GTTATGGGAT CTTGGTGGGC AGCCAAGGTT CCGCAGCATG
TGGGAACGTT ACTGTCGTGC GGTTTCTGCT ATTGTTTATG TTGTTGATGC TGCCGATGCA GATAATCTTA GCATATCAAG
AAGTGAGCTT CATGATTTGC TGAGCAAACC ATCATTGAGT GGCATTCCTT TGTTGGTATT GGGGAACAAG ATTGACAAAC
CAGGCGCTCT GTCTAAGCAA GCATTGACTG ACCAAATGGA ATTGAAGTCA ATCATTGACA GGGAAGTTTG CTGCTTCATG
ATCTCGTGCA AAAACTCGAC GAACATTGAC TCTGTTATAG ACTGGCTTGT AAAGCATTCC AAATCGAAGA GCTGA

>Vigan.10G188200.01
MGLWEAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM
WERYCRAVSA IVYVVDAADA DNLSISRSEL HDLLSKPSLS GIPLLVLGNK IDKPGALSKQ ALTDQMELKS IIDREVCCFM
ISCKNSTNID SVIDWLVKHS KSKS*