VIGGS:GBrowse

Vigan.10G188800.01

Basic Information:

Name:	Vigan.10G188800.01 Multiple alignment Variant Information
Position:	Chr10:24277050..24280711 (+ strand)
Length:	3662

Functional Information:

Description:	Similar to adiponectin receptor protein 1-like isoform X2. [XP_004511820.1, Cicer arietinum]
GO:	Cellular Component: integral to membrane (GO:0016021)
InterPro:	Hly-III-related (IPR004254)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:12.62,6.54,16.79,11.31,11.01,32.43,23.57,6.42
Arabidopsis thaliana homolog:	AT4G37680.1, AT4G38320.1

Automatic updates:

Name:	NM_001254625 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ADIPOR-like receptor IZH1-like (LOC100776175), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255920 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ADIPOR-like receptor IZH1-like (LOC100778227), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:24277050..24277469 (+ strand)
Length:	420
Type:	five_prime_UTR

Position:	Chr10:24277470..24277702 (+ strand)
Length:	233
Type:	CDS

Position:	Chr10:24278891..24279164 (+ strand)
Length:	274
Type:	CDS

Position:	Chr10:24279632..24280285 (+ strand)
Length:	654
Type:	CDS

Position:	Chr10:24280286..24280711 (+ strand)
Length:	426
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G188800.01
TTTGTGGGTA ATTAATCTGG CTTTTGGAAA CTATAGCTGG CGTGGCGCAA CAGGCAAAGG AAATATCGCG TCTAAACGGA
CTTAAAAAAC AAAGAACGAA ACTGTAGGTG GCACCACAGC ATCTCGTTGA AGAATCTTCC TCGTCACATC ACACCTGTTA
ACGTCGAAAT TTCTTGCAAC TCTAATAAAC TGCGTTTCCG CAATCACCTT CGTTACATTT GTCGCATCGA CTTTTGTTTT
TCTCTCCCTC CGTTCCTCAC AATTATCGCC ACCTCTTCGT TATTCTACAT TTCTAGGTAC CTTTTAATCC CTATGTTTTG
CCTAATAATA TCTATTTTCT TTCGTCTTGG AGTTCTCGAA GAGCGTTTAA TTGGGTCTCT TTTAGGTTAA TTGTCGTTTT
GGCTGTCGAA TTGACAGAAG ATGGGGGCTG AGGATTTGAA TTTGATGGAG AACGAAGGGG CGTGTCGCGG AAGGGAAGGG
AAAGGGAGGA GGCTCTGGAA GAAGGTGAAG TACCAGCTGG TGGAGTACCA TTCTTTGCCC GGTTACTTGA GAGACAACGA
GTACATTCTC GGTCACTATC GATCTGAATG GCCCCTCAAG CAGGTTCTGC TGAGCATGTT CACCATACAC AACGAAACTC
TCAACGTTTG GACGCATTTG GTCGGGTTCT TCATATTTCT GGCATTGACC ATATACACTG CCATGAAAAT TCCAAAGGTT
GTAGATCTTA ATTCCCTACA GCATTTTCCT GACATCATGA AGCCCGATCT GCAGAAATTA CAGTCAGAAC TCTTGACGTG
TCTCCCTTCC GTTCCCGATT TACACAGACT CAGAGAGGAA ATCTCAAGTT GGCATATTAA AGAACATCTG TATAATTGTT
TGCCTGTAAG ATTTTCCAGT AGCAATCATA CTGATGTGTG TGTTCTGCAT AGCGTAAAGG ATGACCTGGC GAACATAATA
GCACCACTTA TGATTAGACC AATTACAAGG TGGCCTTTTT TCGCATTTTT AGGGGGTGCC ATGTTTTGCT TGCTAGCTAG
CAGTATTTGC CATCTTCTAT CGTGTCACTC TGAGCGGATG GCATACATCA TGCTGAGGCT TGACTATGCT GGAATTGCAG
CCCTCATATC CACCTCTTTC TACCCTCCAG TATATTACTC TTTTATGTGT TATCCATTTT TCTGCAACCT TTACTTAGGA
TTTATCACCG TATTGGGTAT TGCCACCATC TTGGTTTCTC TGCTTCCAGT GTTCCAAAAT CCTGAATTCC GCACCATCCG
AGCATCTCTC TTCTTCGGAA TGGGTTTGTC CGGAGCAGCA CCTATACTGC ACAAACTTTT TCTATTCTGG GGCCAGCCAG
AAGTATTTCA CACAACCGGA TACGAGATCC TGATGGGTGT TCTCTATGGA ATTGGTGCAC TGGTTTATGC CACTAGGATT
CCAGAACGAT GGATGCCTGG GAAGTTTGAC ATTGCCGGAC ATAGTCACCA ATTGTTTCAT ATATTGGTGG TGGCTGGAGC
ATATGTTCAT TATCGGGCTG GGTTGGTTTA TCTCAGGTGG CGTGATCTTC AAGGTTGCTG ATTTAATAAG CATCTATAAC
AGTGGTTGAA TACTCTGCTG TGATGTTACC AGTAAGTATG TTTAGTATAC AATCCTCTAA CTGATGTGAA TTTGTGATTC
CAGTTGGGGA TGTTTATGCA ACCATAGGCA TTATGTACAC ACTTAGACCC TCAGAACAAA CCATTAATAA GGAATAAAAG
TTCATTTACT CTCTCATGGC ATACCAGAAA CGTTTTTCTC TATTTGGGTG GGCGTATGCT TCTTATTAAA GCTGTGTAAG
TAATATGCTT GCTCGGGAAG TCGAGATACT ATTTAGTAAC TGTTTTTTTT TTCTTTTTCT GTATTTGCAA TATATAATTT
TTTTTAAAGG AAAAGAACCT TTATTAATTT AATGTGCAGT TTGTTTTATC TAAACTGTTT TTGTGAATTT TTAGAACGTA
TGTACCG

[show][hide][copy]CDS

>Vigan.10G188800.01
ATGGGGGCTG AGGATTTGAA TTTGATGGAG AACGAAGGGG CGTGTCGCGG AAGGGAAGGG AAAGGGAGGA GGCTCTGGAA
GAAGGTGAAG TACCAGCTGG TGGAGTACCA TTCTTTGCCC GGTTACTTGA GAGACAACGA GTACATTCTC GGTCACTATC
GATCTGAATG GCCCCTCAAG CAGGTTCTGC TGAGCATGTT CACCATACAC AACGAAACTC TCAACGTTTG GACGCATTTG
GTCGGGTTCT TCATATTTCT GGCATTGACC ATATACACTG CCATGAAAAT TCCAAAGGTT GTAGATCTTA ATTCCCTACA
GCATTTTCCT GACATCATGA AGCCCGATCT GCAGAAATTA CAGTCAGAAC TCTTGACGTG TCTCCCTTCC GTTCCCGATT
TACACAGACT CAGAGAGGAA ATCTCAAGTT GGCATATTAA AGAACATCTG TATAATTGTT TGCCTGTAAG ATTTTCCAGT
AGCAATCATA CTGATGTGTG TGTTCTGCAT AGCGTAAAGG ATGACCTGGC GAACATAATA GCACCACTTA TGATTAGACC
AATTACAAGG TGGCCTTTTT TCGCATTTTT AGGGGGTGCC ATGTTTTGCT TGCTAGCTAG CAGTATTTGC CATCTTCTAT
CGTGTCACTC TGAGCGGATG GCATACATCA TGCTGAGGCT TGACTATGCT GGAATTGCAG CCCTCATATC CACCTCTTTC
TACCCTCCAG TATATTACTC TTTTATGTGT TATCCATTTT TCTGCAACCT TTACTTAGGA TTTATCACCG TATTGGGTAT
TGCCACCATC TTGGTTTCTC TGCTTCCAGT GTTCCAAAAT CCTGAATTCC GCACCATCCG AGCATCTCTC TTCTTCGGAA
TGGGTTTGTC CGGAGCAGCA CCTATACTGC ACAAACTTTT TCTATTCTGG GGCCAGCCAG AAGTATTTCA CACAACCGGA
TACGAGATCC TGATGGGTGT TCTCTATGGA ATTGGTGCAC TGGTTTATGC CACTAGGATT CCAGAACGAT GGATGCCTGG
GAAGTTTGAC ATTGCCGGAC ATAGTCACCA ATTGTTTCAT ATATTGGTGG TGGCTGGAGC ATATGTTCAT TATCGGGCTG
GGTTGGTTTA TCTCAGGTGG CGTGATCTTC AAGGTTGCTG A

[show][hide][copy]PROTEIN

>Vigan.10G188800.01
MGAEDLNLME NEGACRGREG KGRRLWKKVK YQLVEYHSLP GYLRDNEYIL GHYRSEWPLK QVLLSMFTIH NETLNVWTHL
VGFFIFLALT IYTAMKIPKV VDLNSLQHFP DIMKPDLQKL QSELLTCLPS VPDLHRLREE ISSWHIKEHL YNCLPVRFSS
SNHTDVCVLH SVKDDLANII APLMIRPITR WPFFAFLGGA MFCLLASSIC HLLSCHSERM AYIMLRLDYA GIAALISTSF
YPPVYYSFMC YPFFCNLYLG FITVLGIATI LVSLLPVFQN PEFRTIRASL FFGMGLSGAA PILHKLFLFW GQPEVFHTTG
YEILMGVLYG IGALVYATRI PERWMPGKFD IAGHSHQLFH ILVVAGAYVH YRAGLVYLRW RDLQGC*