GBrowse Details

Vigan.10G190500.01

Basic Information:
Name: Vigan.10G190500.01
Multiple alignment
Variant Information
Position: Chr10:24394594..24397059 (+ strand)
Length: 2466
Functional Information:
Description: Similar to 1-aminocyclopropane-1-carboxylate synthase. [O24544, Vigna radiata var. radiata]
GO: Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
Aminotransferase, class I/classII (IPR004839)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.03,0.02,0.00,0.00,0.05,0.96
Arabidopsis thaliana homolog: AT2G22810.1, AT3G49700.1, AT4G08040.1, AT4G26200.1, AT4G37770.1, AT5G65800.1
Automatic updates:
Name: NM_001317154 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata 1-aminocyclopropane-1-carboxylate synthase 3-like (LOC106777325), mRNA.
PubMed ID: 9150600 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:24394594..24394793 (+ strand)
Length: 200
Type: five_prime_UTR
Position: Chr10:24394794..24394940 (+ strand)
Length: 147
Type: CDS
Position: Chr10:24395179..24395471 (+ strand)
Length: 293
Type: CDS
Position: Chr10:24395813..24396791 (+ strand)
Length: 979
Type: CDS
Position: Chr10:24396792..24397059 (+ strand)
Length: 268
Type: three_prime_UTR


>Vigan.10G190500.01
GGATCAAGAG TTACAACCTT CACTTTATAC TCTCTCCTTT ACATTCTTTC TTCAAATCGC TTTTAGAAGC TACTTTATTG
CTTCAGCCTT TCTCCTTTTC AAGGAGCTTC GATTTAATCT CCTCATAGTT CTTTTCAGAT AACAAATCCC AGACATCTCT
TTCATATCCT TTTTCTACTC TTACCCAGAA AAAACAAAAA ATGAAGTTGT TGTCTACAAA AGCCACATGC AACTCTCATG
GCCAAGATTC CTCATACTTC CTAGGATGGC AAGAATACGA GAAGAACCCC TACGATGAGG TTCTGAATCC CGAAGGAATT
ATTCAGATGG GTCTTGCAGA GAATCAGCTC TCTTTCGATC TCCTAGAGTC TTGGCTCGCT AAGAACCCTG ACGTGGCGGG
ATTCAAGAGC GATGGCAAAT CCATATTCCG AGAGCTTGCT CTGTTCCAGG ACTATCATGG CCTCCCTTCC TTCAAGAAGG
CATTGGTGGA CTTCATGGCT GAGATTCGAG GAAACAAAGT GACTTTTGAT CCCAACCACA TTGTTCTAAC AGCTGGTGCC
ACCTCAGCAA ATGAGACCCT CATGTTTTGT CTTGCTGAAC TAGGAGATGC GTTCCTCCTT CCCACTCCTT ATTACCCTGG
ATTCGATAGA GATCTCAAGT GGCGAACTGG GGTGGAGATC GTTCCAATAC AATGCACTAG CTCCAATAAC TTCCAAATCA
CTGAAGCCGC TTTGAAACAG GCTTATCAAG AGGCGAAGAA GCGCAACCTC AGAGTCAAAG GCGTGTTGGT GACAAACCCA
TCCAACCCAC TTGGCACTAC CATGTCCCGG TGTGAATTGA ATCTTCTCGT TGACTTCATC AAAGACAAAA ACATGCATTT
AATAAGCGAC GAGATTTACT CCGGTACCGT TTACAATTCC CCAGGCTTCG TCAGCATCAT GGAAATCCTT AAGGACAGAA
ATGACCTTAA AGATTGCGGT GTCAATGTTT GGGACCGAGT TCACGTTGTG TATAGTCTCT CCAAAGACTT GGGCTTACCA
GGATTCCGTG TGGGCGCAAT CTATTCTGAA AACGAGGTCG TTGTGGCGGC TGCGACAAAA ATGTCAAGCT TTGGCTTGGT
TTCCTCACAA ACTCAGTACC TCCTCTCAGC CATGCTGGGT GATAAGAAAT TCACCAAAAA CTACATCTCT GAGAACCTAA
AGAGGCTGAA ACGACGCCAG AGAAACCTTG TTTCAGGCCT CCAGAAAGCA GGCATTAGTT GTCTTAAAAC CAACAATGCA
GGCTTGTTTT GTTGGGTTGA CATGAGGCAC CTTCTCCATT CCAACACATT CGAAGCTGAG ATGGTGCTCT GGAAGAAGAT
ACTCTACGAG GTTCGGTTAA ACATATCTCC AGGGTCCTCC TGCCACTGTA CCGAACCTGG CTGGTTCCGG ATGTGCTTTG
CTAACATGTC CGAAGAAACT CTAAACCTAG CCATGAAACG GTTGAAGACC TTCGTCCAAG AGTCAAATCA CGACAACGGG
TGCACCATGA AAAGAGTTCG GTCTTCAAGA AGAAAGTCAC TCTCCAATTG GGTATTCCGG CTATCTTCTC GCGAACATCG
TGAACAAGAA CAACGATAGC CCGGCGGTGA CGTGAACTGT GCTAAGTCTG AACGCATGCA GAATTAACTT TATTATTTTT
TCCTCCCCGA ATATTCTTGG CGGAGTTACA ACTACGTAGC TATAGTTATT GTTATTTATT ACTATTACTA TTTTTTTAAA
TGATGAAATT GTAGCTAGAG AAGACGGACA CTCTATCCAT CATTGGATGT AAAGGGTGGT CTTTTAATTA GTGAGCTACC
ATCGTTTGTA CAACTTCCAT CTCAATCATC AGTTACCTTA TGCATGA

>Vigan.10G190500.01
ATGAAGTTGT TGTCTACAAA AGCCACATGC AACTCTCATG GCCAAGATTC CTCATACTTC CTAGGATGGC AAGAATACGA
GAAGAACCCC TACGATGAGG TTCTGAATCC CGAAGGAATT ATTCAGATGG GTCTTGCAGA GAATCAGCTC TCTTTCGATC
TCCTAGAGTC TTGGCTCGCT AAGAACCCTG ACGTGGCGGG ATTCAAGAGC GATGGCAAAT CCATATTCCG AGAGCTTGCT
CTGTTCCAGG ACTATCATGG CCTCCCTTCC TTCAAGAAGG CATTGGTGGA CTTCATGGCT GAGATTCGAG GAAACAAAGT
GACTTTTGAT CCCAACCACA TTGTTCTAAC AGCTGGTGCC ACCTCAGCAA ATGAGACCCT CATGTTTTGT CTTGCTGAAC
TAGGAGATGC GTTCCTCCTT CCCACTCCTT ATTACCCTGG ATTCGATAGA GATCTCAAGT GGCGAACTGG GGTGGAGATC
GTTCCAATAC AATGCACTAG CTCCAATAAC TTCCAAATCA CTGAAGCCGC TTTGAAACAG GCTTATCAAG AGGCGAAGAA
GCGCAACCTC AGAGTCAAAG GCGTGTTGGT GACAAACCCA TCCAACCCAC TTGGCACTAC CATGTCCCGG TGTGAATTGA
ATCTTCTCGT TGACTTCATC AAAGACAAAA ACATGCATTT AATAAGCGAC GAGATTTACT CCGGTACCGT TTACAATTCC
CCAGGCTTCG TCAGCATCAT GGAAATCCTT AAGGACAGAA ATGACCTTAA AGATTGCGGT GTCAATGTTT GGGACCGAGT
TCACGTTGTG TATAGTCTCT CCAAAGACTT GGGCTTACCA GGATTCCGTG TGGGCGCAAT CTATTCTGAA AACGAGGTCG
TTGTGGCGGC TGCGACAAAA ATGTCAAGCT TTGGCTTGGT TTCCTCACAA ACTCAGTACC TCCTCTCAGC CATGCTGGGT
GATAAGAAAT TCACCAAAAA CTACATCTCT GAGAACCTAA AGAGGCTGAA ACGACGCCAG AGAAACCTTG TTTCAGGCCT
CCAGAAAGCA GGCATTAGTT GTCTTAAAAC CAACAATGCA GGCTTGTTTT GTTGGGTTGA CATGAGGCAC CTTCTCCATT
CCAACACATT CGAAGCTGAG ATGGTGCTCT GGAAGAAGAT ACTCTACGAG GTTCGGTTAA ACATATCTCC AGGGTCCTCC
TGCCACTGTA CCGAACCTGG CTGGTTCCGG ATGTGCTTTG CTAACATGTC CGAAGAAACT CTAAACCTAG CCATGAAACG
GTTGAAGACC TTCGTCCAAG AGTCAAATCA CGACAACGGG TGCACCATGA AAAGAGTTCG GTCTTCAAGA AGAAAGTCAC
TCTCCAATTG GGTATTCCGG CTATCTTCTC GCGAACATCG TGAACAAGAA CAACGATAG

>Vigan.10G190500.01
MKLLSTKATC NSHGQDSSYF LGWQEYEKNP YDEVLNPEGI IQMGLAENQL SFDLLESWLA KNPDVAGFKS DGKSIFRELA
LFQDYHGLPS FKKALVDFMA EIRGNKVTFD PNHIVLTAGA TSANETLMFC LAELGDAFLL PTPYYPGFDR DLKWRTGVEI
VPIQCTSSNN FQITEAALKQ AYQEAKKRNL RVKGVLVTNP SNPLGTTMSR CELNLLVDFI KDKNMHLISD EIYSGTVYNS
PGFVSIMEIL KDRNDLKDCG VNVWDRVHVV YSLSKDLGLP GFRVGAIYSE NEVVVAAATK MSSFGLVSSQ TQYLLSAMLG
DKKFTKNYIS ENLKRLKRRQ RNLVSGLQKA GISCLKTNNA GLFCWVDMRH LLHSNTFEAE MVLWKKILYE VRLNISPGSS
CHCTEPGWFR MCFANMSEET LNLAMKRLKT FVQESNHDNG CTMKRVRSSR RKSLSNWVFR LSSREHREQE QR*