GBrowse Details

Vigan.10G191000.01

Basic Information:
Name: Vigan.10G191000.01
Multiple alignment
Variant Information
Position: Chr10:24449975..24452164 (+ strand)
Length: 2190
Functional Information:
Description: Similar to Uncharacterized protein. [I1LH34, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Homeobox domain (IPR001356)
Leucine zipper, homeobox-associated (IPR003106)
Homeodomain-like (IPR009057)
Homeobox, conserved site (IPR017970)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.20,1.95,13.87,18.77,2.96,22.53,4.68,26.83
Arabidopsis thaliana homolog: AT4G37790.1
Automatic updates:
Name: NM_001359236 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor ABIG1-like protein (LOC100795135), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:24449975..24450359 (+ strand)
Length: 385
Type: five_prime_UTR
Position: Chr10:24450360..24450863 (+ strand)
Length: 504
Type: CDS
Position: Chr10:24450965..24451044 (+ strand)
Length: 80
Type: CDS
Position: Chr10:24451480..24451762 (+ strand)
Length: 283
Type: CDS
Position: Chr10:24451763..24452164 (+ strand)
Length: 402
Type: three_prime_UTR


>Vigan.10G191000.01
CAGGAATTTA AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGGG ATTTTCCAAG TTTGTCTGTT ATTATAATTA
TTTATAATTA TAATGGAGCT AACAGTGTTG GGGTTCAAAT GGTCAACCTA TGCAAGAGAT ATACTACTCC AAGGGACTTT
CATTATTTCC AATATCAAGA TTCCTTTCTC TACTCATTCC TCCCTTTGAT TAACAATAAT CATAGCCACC CACCCACCCA
CCCAACGCCC CCACAAAACC TCACTCTCTC TCTTCTCTTC TCTTCTTCTT AAGACCCTTT CAGTCCCACG ACCCTTTAAA
CCACACAACA TCTATAATTT TTCAACCCAA GAACCAGATA CGTACCCACC CCCTTATTCT CTCAAATGGG TTTTGATCAC
GATGCCAGTA CCTCTGGCCT TCACCTCGTT CTAGGGTTAT CTTTGACTGC TACCACCACT CCATCTACCA AGCCTCAAGA
TCATCACCAT CATCATCATC ATCATTTTTG TGTTGTTAAG CCTTCGCCAA CCAAGCCTAA TTCCCCCAAT GAACCATCTT
TGACGTTGGG TTTGTCTGGC GATAGCTGCC ACCTAGCCAA GCAAGTGCCC AACAACAGTA AGGTTTATTG TGAGGACCCT
CTTGACATGT CTAGACAGAC GTCACCTCAC AGCGTGGTTT CGTCTTTCTC AACTGGGAGG GTTGTGAAGA GGGAGAGAGA
TCTTAGCTTT GAAGAGGTAG AGGCAGAGGC AGAGGCAGAA GAGAGGGTTT CTTCAAGAGT GAGCGACGAA GAAGAAGACG
GCACCAATGC TAGGAAGAAA CTCAGACTCA CCAAAGAACA ATCTGCACTA CTGGAGGAGA GCTTCAAACA ACACAGCACT
CTCAATCCTA AACAGAAGCA AGCTTTAGCC AGACAGTTAA ATCTACGGCC TCGACAAGTT GAAGTGTGGT TTCAGAATCG
GAGAGCCAGA ACAAAGCTGA AGCAGACAGA GGTGGACTGT GAGTTCTTGA AGAAATGCTG TGAAACGTTG ACGGACGAAA
ACAGAAGGTT AAAGAAGGAG CTGCAGGAGC TGAAGGCACT GAAACTAGCT CAACCCTTGT ACATGCCTAT GCCTGCGGCA
ACACTCACCA TGTGCCCTTC TTGCGAGAGG CTCGGTGGCG TTAGCGATAA CGCTTCCAAT AAAAGTCCTT TCTCCATGGC
TCCCAAGACT CACTTCTACA ACCCCTTTGC CAATCCTTCT GCAGCATGTT GATTGTGGTT AGGTTTTCAC TCTTTGGGGC
GAAGAGGTGA AAGAGAAGAG TTATTTCGCA CGACCATTGT ATTTTTTTGG TTGAGGGCGA TGCGTCTAGT TAGGGAAAAG
TTGTAATTAG CTAATACTGT TAAGAATAGT AACTTCTGAT TGAAATTACC TTTTTCTTTT TCTTCCGCTA ATGTATGTTT
ATATAAACCA TTACAGATGG TGTCCTTCTA TATATGAAGG TGTTAGAATT TTTTTATTGT TCATTTTAAA GTAGTAACTG
TATATGTATA CATATAGATA CACATATACT AATGTCGTGA AACAGACAAT GGAAAAGAAA AAGGATAACT GGCCGTGGGG
ATAATCTCAT TTCCTCCTCC ATTATAAGGC CTCATGTTAA CGTGCATCTT TTTG

>Vigan.10G191000.01
ATGGGTTTTG ATCACGATGC CAGTACCTCT GGCCTTCACC TCGTTCTAGG GTTATCTTTG ACTGCTACCA CCACTCCATC
TACCAAGCCT CAAGATCATC ACCATCATCA TCATCATCAT TTTTGTGTTG TTAAGCCTTC GCCAACCAAG CCTAATTCCC
CCAATGAACC ATCTTTGACG TTGGGTTTGT CTGGCGATAG CTGCCACCTA GCCAAGCAAG TGCCCAACAA CAGTAAGGTT
TATTGTGAGG ACCCTCTTGA CATGTCTAGA CAGACGTCAC CTCACAGCGT GGTTTCGTCT TTCTCAACTG GGAGGGTTGT
GAAGAGGGAG AGAGATCTTA GCTTTGAAGA GGTAGAGGCA GAGGCAGAGG CAGAAGAGAG GGTTTCTTCA AGAGTGAGCG
ACGAAGAAGA AGACGGCACC AATGCTAGGA AGAAACTCAG ACTCACCAAA GAACAATCTG CACTACTGGA GGAGAGCTTC
AAACAACACA GCACTCTCAA TCCTAAACAG AAGCAAGCTT TAGCCAGACA GTTAAATCTA CGGCCTCGAC AAGTTGAAGT
GTGGTTTCAG AATCGGAGAG CCAGAACAAA GCTGAAGCAG ACAGAGGTGG ACTGTGAGTT CTTGAAGAAA TGCTGTGAAA
CGTTGACGGA CGAAAACAGA AGGTTAAAGA AGGAGCTGCA GGAGCTGAAG GCACTGAAAC TAGCTCAACC CTTGTACATG
CCTATGCCTG CGGCAACACT CACCATGTGC CCTTCTTGCG AGAGGCTCGG TGGCGTTAGC GATAACGCTT CCAATAAAAG
TCCTTTCTCC ATGGCTCCCA AGACTCACTT CTACAACCCC TTTGCCAATC CTTCTGCAGC ATGTTGA

>Vigan.10G191000.01
MGFDHDASTS GLHLVLGLSL TATTTPSTKP QDHHHHHHHH FCVVKPSPTK PNSPNEPSLT LGLSGDSCHL AKQVPNNSKV
YCEDPLDMSR QTSPHSVVSS FSTGRVVKRE RDLSFEEVEA EAEAEERVSS RVSDEEEDGT NARKKLRLTK EQSALLEESF
KQHSTLNPKQ KQALARQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CCETLTDENR RLKKELQELK ALKLAQPLYM
PMPAATLTMC PSCERLGGVS DNASNKSPFS MAPKTHFYNP FANPSAAC*