GBrowse Details

Vigan.10G193000.01

Basic Information:
Name: Vigan.10G193000.01
Multiple alignment
Variant Information
Position: Chr10:24626304..24629565 (+ strand)
Length: 3262
Functional Information:
Description: Similar to protein. [D7LHU4, Arabidopsis lyrata subsp. lyrata]
GO: Cellular Component: membrane (GO:0016020)
InterPro: CAAX amino terminal protease (IPR003675)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.84,0.57,33.65,275.09,19.24,23.85,8.16,46.64
Arabidopsis thaliana homolog: AT2G35260.1
Automatic updates:
Name: LC649881 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cv. TENSHIN DAI SEITOU G mRNA for CAAX protease, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:24626304..24626584 (+ strand)
Length: 281
Type: five_prime_UTR
Position: Chr10:24626585..24626909 (+ strand)
Length: 325
Type: CDS
Position: Chr10:24627184..24627335 (+ strand)
Length: 152
Type: CDS
Position: Chr10:24627427..24627522 (+ strand)
Length: 96
Type: CDS
Position: Chr10:24627615..24627677 (+ strand)
Length: 63
Type: CDS
Position: Chr10:24628235..24628303 (+ strand)
Length: 69
Type: CDS
Position: Chr10:24628484..24628586 (+ strand)
Length: 103
Type: CDS
Position: Chr10:24628672..24628743 (+ strand)
Length: 72
Type: CDS
Position: Chr10:24629009..24629097 (+ strand)
Length: 89
Type: CDS
Position: Chr10:24629215..24629361 (+ strand)
Length: 147
Type: CDS
Position: Chr10:24629362..24629565 (+ strand)
Length: 204
Type: three_prime_UTR


>Vigan.10G193000.01
TGCCAACGTT ATCTCCACAT GGCAGGGTGT GGTTGGTTGT TGGGATATTC TAATCAATCT TGTCCAAGTT GACCACTCCA
TCTTCAAATC AGCTTCTCTT CCTCACGACT CATACAAACC ACACCCACAG AGATACGAAC ACGAACATTG GTATAACAAT
ATAGGAGATG CTGTCATATG TTATTGTATG TTACAACCTC GCTGGCAATT AATGAACAAC GCCAAATCTC ACACCTTTAC
TTCTCTTTCC TCCTTCTGAA CAATCCTTGT CCTTGTTGTT GATGGAGCTG TCTCTGCGGC TCACTCCTTC GCCTTCGAGT
TCAACTTCAT CTCTTCCTGC AGCACTTGCT CACTGCTCCA AGCTCTGTGA ATTTCAGCCC AGGAAGAAGA AGAACAACGT
GTGTTTCGAC GCGCCTAAGC TTTCGGTGCG TTGTGTCAAG GCTTCGGCGG AGGGAAGCGG CGACGCAATC GATGATGGAA
AGGCTCGAAC TGGGTTCACT ACACCTGCCA TGGAGGTCAC CACATTCAAC CGCAGCACTT TCAACGATGC CGACTTTCCC
GTTTGGGAAA AGATTGGTGC TGTCGTCAGA CTCAGTTATG GCATCGGGAT TTATGGTGCC ATGGCTGTTG CGGGGAGTTT
TATCTGTTCG ATTACAGGAA TTGACTCTCT GGGGGGTTTC CATCTATCGC TAGATGCCAT TTTGGAAGGA CTTGGATATG
CAGCTCCTCC AATTATGGCC CTTTTGTTTA TACTCGATGA TGAAGTTGTG AAGCTATCAC CCCATGCCCG TGCCATCAGA
GATGTTGAGG ATGAAGAACT GTGGAGCTTT TTCTATGGGA TGTCCCCTTG GCAGTTTATA CTGATGGTTG CTGCGAGTTC
AGTTGGAGAG GAGCTCTTCT ACAGGGCTGC TGTTCAGGGG GCATTGGCTG ATATATTCTT AAGAGGCAGT AATCTTATAA
CAGATGCTCA AGGAATGGCA TCATTGACTG GTGTGCTGCC TCCATTTGTT CCATTTGCTC AGGCATTTGC AGCAGTTCTT
ACAGCTGTCC TTACTGGATC TCTCTATTAC ATGGCTGCCT CTCCTAAAGA TCCTACTTAT GTTGTTGCAC CTGTTACACA
GTCTCGCTCT GGTCGTCAAG ATTTGAAAAA GCTGTTTGAA GCCTGGTATG AAAAACGGCA AATGAAAAAA ATCTATTCTC
CACTTCTGGA AGGATTACTA GCCCTGTACC TAGGTCTGGA GTGGATCCAG ACTGATAACA TTCTTGCTCC GATTATCACA
CATGGCATAT ATTCCACTGT GATATTGGGA CATGGGCTCT GGAAGATACA TGACCACCGG CGTAGACTAC GTCAGAGAAT
CCAACAGTTA AAATCAGAAG AAAAAAACAC CAACTAGATT TTGAAATATT ATCACTGTTT TTGGTTGAAA AGAAGTGTAT
ATTAGAGTTG TTGTATAAAG AGAATATATG TATACTCATT TTAGTTTTTG TCTCGTACAT AAAGAATAAT CAGGTTTTGT
TTACAGAATT TTCTAAATAA GAGTTGTCAC CTTTTTTTCC CCAGTAAAAT GGGATAATAA AAATGTTGGT TCTTTTGGTC
A

>Vigan.10G193000.01
ATGGAGCTGT CTCTGCGGCT CACTCCTTCG CCTTCGAGTT CAACTTCATC TCTTCCTGCA GCACTTGCTC ACTGCTCCAA
GCTCTGTGAA TTTCAGCCCA GGAAGAAGAA GAACAACGTG TGTTTCGACG CGCCTAAGCT TTCGGTGCGT TGTGTCAAGG
CTTCGGCGGA GGGAAGCGGC GACGCAATCG ATGATGGAAA GGCTCGAACT GGGTTCACTA CACCTGCCAT GGAGGTCACC
ACATTCAACC GCAGCACTTT CAACGATGCC GACTTTCCCG TTTGGGAAAA GATTGGTGCT GTCGTCAGAC TCAGTTATGG
CATCGGGATT TATGGTGCCA TGGCTGTTGC GGGGAGTTTT ATCTGTTCGA TTACAGGAAT TGACTCTCTG GGGGGTTTCC
ATCTATCGCT AGATGCCATT TTGGAAGGAC TTGGATATGC AGCTCCTCCA ATTATGGCCC TTTTGTTTAT ACTCGATGAT
GAAGTTGTGA AGCTATCACC CCATGCCCGT GCCATCAGAG ATGTTGAGGA TGAAGAACTG TGGAGCTTTT TCTATGGGAT
GTCCCCTTGG CAGTTTATAC TGATGGTTGC TGCGAGTTCA GTTGGAGAGG AGCTCTTCTA CAGGGCTGCT GTTCAGGGGG
CATTGGCTGA TATATTCTTA AGAGGCAGTA ATCTTATAAC AGATGCTCAA GGAATGGCAT CATTGACTGG TGTGCTGCCT
CCATTTGTTC CATTTGCTCA GGCATTTGCA GCAGTTCTTA CAGCTGTCCT TACTGGATCT CTCTATTACA TGGCTGCCTC
TCCTAAAGAT CCTACTTATG TTGTTGCACC TGTTACACAG TCTCGCTCTG GTCGTCAAGA TTTGAAAAAG CTGTTTGAAG
CCTGGTATGA AAAACGGCAA ATGAAAAAAA TCTATTCTCC ACTTCTGGAA GGATTACTAG CCCTGTACCT AGGTCTGGAG
TGGATCCAGA CTGATAACAT TCTTGCTCCG ATTATCACAC ATGGCATATA TTCCACTGTG ATATTGGGAC ATGGGCTCTG
GAAGATACAT GACCACCGGC GTAGACTACG TCAGAGAATC CAACAGTTAA AATCAGAAGA AAAAAACACC AACTAG

>Vigan.10G193000.01
MELSLRLTPS PSSSTSSLPA ALAHCSKLCE FQPRKKKNNV CFDAPKLSVR CVKASAEGSG DAIDDGKART GFTTPAMEVT
TFNRSTFNDA DFPVWEKIGA VVRLSYGIGI YGAMAVAGSF ICSITGIDSL GGFHLSLDAI LEGLGYAAPP IMALLFILDD
EVVKLSPHAR AIRDVEDEEL WSFFYGMSPW QFILMVAASS VGEELFYRAA VQGALADIFL RGSNLITDAQ GMASLTGVLP
PFVPFAQAFA AVLTAVLTGS LYYMAASPKD PTYVVAPVTQ SRSGRQDLKK LFEAWYEKRQ MKKIYSPLLE GLLALYLGLE
WIQTDNILAP IITHGIYSTV ILGHGLWKIH DHRRRLRQRI QQLKSEEKNT N*