GBrowse Details

Vigan.10G195900.01

Basic Information:
Name: Vigan.10G195900.01
Multiple alignment
Variant Information
Position: Chr10:24858463..24860542 (+ strand)
Length: 2080
Functional Information:
Description: Similar to vacuolar protein sorting-associated protein 55 homolog isoform X3. [XP_004511766.1, Cicer arietinum]
InterPro: Vacuolar protein sorting 55 (IPR007262)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.39,37.78,8.76,17.10,11.56,9.34,11.70,13.98
Arabidopsis thaliana homolog: AT1G32410.1
Automatic updates:
Name: NM_001248419 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306202 (LOC100306202), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249022 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500037 (LOC100500037), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001399588 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500037 (LOC100500037), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:24858463..24859538 (+ strand)
Length: 1076
Type: five_prime_UTR
Position: Chr10:24859539..24859637 (+ strand)
Length: 99
Type: CDS
Position: Chr10:24859743..24859782 (+ strand)
Length: 40
Type: CDS
Position: Chr10:24859896..24859977 (+ strand)
Length: 82
Type: CDS
Position: Chr10:24860112..24860304 (+ strand)
Length: 193
Type: CDS
Position: Chr10:24860305..24860542 (+ strand)
Length: 238
Type: three_prime_UTR


>Vigan.10G195900.01
TTTCTATTAT AATTGGACCG TTGATTCCTA CATACCAGAG ATGGTGTCGG TTTCTGGTAG TTTCAAAATG CAAAATTAAA
ATACGATTAA GATTGAGGTT CAGCTACAGC GTTCCAGGAC TCACAGATAC CAATTTTCTT TTCAATTCTC GCGTCAATTT
AAACTTTGTC TGTGTTTATT TCGGACCCTA TCTACCCTCA CTGTTCGTTG CTTCAATCGA ATTTTTTCAT CTCATCTCGT
ATATTATTAG GAAAATTACC ATTTTCTTAA CTCTTAATTT GTTCTGGATT TTTGTCCAAT TCATTTGCTC GTTCGATCAA
ATTTACCATT TCTTTATATG AGATGGCGAG AGTTTCTGCT GGCTTTTTAG TTGTTAGATG TCTGTGGTTT ATTGGAGTGT
TGTATGACTG TATAGTAAAT ACATTTATTG CCCTATTTCA TCCGATTAAT CAAATTGGGG ATAGTGTTGT TTTGAATTGA
TTATGGACAT GGTTATGTAA ACACTGTCAT GATGGCAACG GGAAACATGC AATATTGCGT ACGCTTTAGT TTGAGCCTTT
TAGGTCAATT GATCGTTTCA TTTTAGGTCT CAATTTCTAA GATATGATGA GGTTTGTAAA AGTATGTTGA AAGGGTATTG
GGTTGTTAAA TAGGGGGTTA CGTCTTGAGA TATAGATTGT GGTAGAATAA ATTGTGTTTC TTATACAAAT TGGGATTGCA
ACATGTGAAT TTATTGTGAT GCTGTGAAGA CAAGCTTTTG AGTGTGTTTG ATGAAAGTTT ACAAATTGAT TATGTTTGAA
ATTGATTTTG ATGTGAAGTA ATAATTTATG TTTGGATGCT TTTATTCTAT AAGCAAATTT GTAATAAAAC TCTGTCAACA
CAATTGGATG TTTTTATTTC AATGGATTTT GAATGTTTGA AAGTGAATCC AGACATGCGC TGATATAGAT TGTCACTTTT
GTTTAACTCC ATCTTATTTA TCATGTATTG ATTGAAGTTG CTTATTCATT AATATTTTGT TTTGATGTAA TGTTCTTCAG
TTATTACTCC CTATAACATG AGGAGGTGAC TTGGAGATGT CAGACTTACC AGGATATATG CGTTTCTGTT TGAACACAGG
GAAGCTTCTT TCATTGGCAA TATTGGTCTC TGGGGGAATC GTCTTGCAAA TTTTGGCATG TGTCTTGTAT AATAATTGGT
GGCCGATGCT AAGTGTGTTA ACATATGTGC TTCTACCAAT GCCTTTGCTG TTCTTTGCTG GGTCTAATGA CTCTATATTC
TCCGAATCTG ATAATAGCTG GGTGAATTTT ACTAAGTTCT TGACCGGAGC CTCAACTGTG GGAGGCATTG CCATTCCAAG
CATATTGAAG CATGCAGGGG TTATTGGTTG GGGAGCCTTT GCAATGGAAC TTTCTTCCTA CTTCGTGTTT GGACTGACTG
TAATATGTTA CCTTTGGATG GGTGATGAAG ATGAATACAG TATCCTCTGA TACGAGATTT GCTTCATCAT TGTAAAAATG
AATTGCTCCT TTCACGCGCT ATTGCTTTTC TTGCATGTGT GACTTTCACT ACAACATATT TGCTTTTTTT TAACGATGAT
TTGTTGACTC CCCCAATTCC AGAGTAGCTT TCAGCCAAAT GAGTGTTTAT TGTCTGTTAA GAAATGAGAC GGCTTTTGTC
CATTTTCTTA TTGTGTTAAC TAAGTGTGCT TTTCATTATA TATTGAAA

>Vigan.10G195900.01
ATGTCAGACT TACCAGGATA TATGCGTTTC TGTTTGAACA CAGGGAAGCT TCTTTCATTG GCAATATTGG TCTCTGGGGG
AATCGTCTTG CAAATTTTGG CATGTGTCTT GTATAATAAT TGGTGGCCGA TGCTAAGTGT GTTAACATAT GTGCTTCTAC
CAATGCCTTT GCTGTTCTTT GCTGGGTCTA ATGACTCTAT ATTCTCCGAA TCTGATAATA GCTGGGTGAA TTTTACTAAG
TTCTTGACCG GAGCCTCAAC TGTGGGAGGC ATTGCCATTC CAAGCATATT GAAGCATGCA GGGGTTATTG GTTGGGGAGC
CTTTGCAATG GAACTTTCTT CCTACTTCGT GTTTGGACTG ACTGTAATAT GTTACCTTTG GATGGGTGAT GAAGATGAAT
ACAGTATCCT CTGA

>Vigan.10G195900.01
MSDLPGYMRF CLNTGKLLSL AILVSGGIVL QILACVLYNN WWPMLSVLTY VLLPMPLLFF AGSNDSIFSE SDNSWVNFTK
FLTGASTVGG IAIPSILKHA GVIGWGAFAM ELSSYFVFGL TVICYLWMGD EDEYSIL*