GBrowse Details

Vigan.10G198200.01

Basic Information:
Name: Vigan.10G198200.01
Multiple alignment
Variant Information
Position: Chr10:25136658..25140809 (+ strand)
Length: 4152
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerases isoform 1. [XP_007039660.1, Theobroma cacao]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.56,3.34,10.41,9.12,11.51,15.75,39.50,8.85
Arabidopsis thaliana homolog: AT4G17070.1
Automatic updates:
Name: NM_001255497 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase CYP32 (CYP32), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Name: NM_001357164 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP31 (GMCYP31), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:25136658..25137005 (+ strand)
Length: 348
Type: five_prime_UTR
Position: Chr10:25137006..25137383 (+ strand)
Length: 378
Type: CDS
Position: Chr10:25138007..25138114 (+ strand)
Length: 108
Type: CDS
Position: Chr10:25138807..25138851 (+ strand)
Length: 45
Type: CDS
Position: Chr10:25139586..25139723 (+ strand)
Length: 138
Type: CDS
Position: Chr10:25140353..25140697 (+ strand)
Length: 345
Type: CDS
Position: Chr10:25140698..25140809 (+ strand)
Length: 112
Type: three_prime_UTR


>Vigan.10G198200.01
TTCTGTTTTA CTTTAATGTT TGGTATCAGC ATCGAATCGA AATCAAACCA AAGAAACAAA ACAACACGTT CTTGTAACAT
TGTCAAAGAC TCGTTTGGGA CCAAAAAAAT CGACAAAATG CCATCGATCT GAACTCTGAA CCCAGAGCGT CCAATTCAAA
ATTCTTTTCA CCTTTTCTTC CATTCTATGC TTTTGAATCG CCACGACGTG ATATGATCCT TCTCTCTTCG ATTTCATTTG
CACTTTCACT GTTGTTTCCC ACTTTCATTT CAAGGTCAAC GGTCTCGGTC TTGGTATTTT CCTGACTCAA TTGCTTACAA
GTTTATCCTT TTCCTGCTAA GCTCTCCAAT GGGTCGGAGG AGCAATGGAC TAAACTCTGT TCTCGCTCAC CGTTTGATAC
TCCTCTTCGT GTGTTTGGCT TCGGGCGGTT TGGTCTACGC GCTTCTCTCT GCGGTGGTCG CAAATGGCAG AAGCAGAGTT
TCAGACTTTG GGAGGCTGGT TGATGAGGGT ATGGCGGTGC AGAATGAGGG AGGGTGCTGT AGGGGGATTG AGAATTTGGA
GCTTTGGGGT TCAGCTGTGA AGTGGGGTTC TGAGTTTAAG TTCAACAATT CTGAAGGATG CTGCAACGCG TGCAAATCAA
TGTGTTCAGG AAAAGATGGA CCTTGTCTCT GTGATACTTG GGTCTTTTGT GGGGATCGTA AGGCCTGTGG ATCCAAGTTC
GGTGAGTGTT GGTTGAAGAA ACAGAAGGAC AGCTTGGCAC CTGAACGGCA AGAAGGAGTG CCTCCAGGGG AAGTGGTTGG
TTGGACTTCT GGTCTTATTT TTGGGAAAGG AGAGGGTATT ATTGGACTGG AAACTGAACA TGGAACTCTT CATATTAAAC
TTTTACCTGA CTGTGCTCCA CACTCCGTTG CCTACATTCT GGAATTGTTG TCTTTGCACC ATTGTGCTGG CTGCCAATTT
TACCGTGCAG AGAGCCGAGG TCAATCATGG GATTCAGAAG GAAACCATAT AGAAAATGCT GGCTTTGGTC CACCTTATGC
ATTAATTCAA GGGACACTAG AAGCACAAGG CACAGCTTTC AATAAACTTC CTGTGGAAGA TTGTCCAACC CTTAGAAGGG
GTTCTGTTGC TTGGATTGGT TCTGGTCCTG AATTCTTCGT TAGCCTTGCT GATCATTCAG AGTGGAAACA TGAATACACT
GTATTTGGTT CTGTTCTTCC AGAAGACATG CATATTGCAG AGAAAATCTC TACACTCCCC ACAATAGCTG ATGTGTGGAA
CAATGTCAAC GTGACGGTTT TGAAAAATCC TGTTCCTCTG TTGGTCCGTA GAATCCAGAA AAGCCACGTA GATGAAATTT
GAAACAAGCT GTGCATCAAT GTAGATTGCA ATTCTTTTTT GTTCCAAAGC TTATAGTTAA AGTTTGCATT AACTTTTGTT
CTGTCTAAAC TTTTTCTTCA TCTTATCATT ATTA

>Vigan.10G198200.01
ATGGGTCGGA GGAGCAATGG ACTAAACTCT GTTCTCGCTC ACCGTTTGAT ACTCCTCTTC GTGTGTTTGG CTTCGGGCGG
TTTGGTCTAC GCGCTTCTCT CTGCGGTGGT CGCAAATGGC AGAAGCAGAG TTTCAGACTT TGGGAGGCTG GTTGATGAGG
GTATGGCGGT GCAGAATGAG GGAGGGTGCT GTAGGGGGAT TGAGAATTTG GAGCTTTGGG GTTCAGCTGT GAAGTGGGGT
TCTGAGTTTA AGTTCAACAA TTCTGAAGGA TGCTGCAACG CGTGCAAATC AATGTGTTCA GGAAAAGATG GACCTTGTCT
CTGTGATACT TGGGTCTTTT GTGGGGATCG TAAGGCCTGT GGATCCAAGT TCGGTGAGTG TTGGTTGAAG AAACAGAAGG
ACAGCTTGGC ACCTGAACGG CAAGAAGGAG TGCCTCCAGG GGAAGTGGTT GGTTGGACTT CTGGTCTTAT TTTTGGGAAA
GGAGAGGGTA TTATTGGACT GGAAACTGAA CATGGAACTC TTCATATTAA ACTTTTACCT GACTGTGCTC CACACTCCGT
TGCCTACATT CTGGAATTGT TGTCTTTGCA CCATTGTGCT GGCTGCCAAT TTTACCGTGC AGAGAGCCGA GGTCAATCAT
GGGATTCAGA AGGAAACCAT ATAGAAAATG CTGGCTTTGG TCCACCTTAT GCATTAATTC AAGGGACACT AGAAGCACAA
GGCACAGCTT TCAATAAACT TCCTGTGGAA GATTGTCCAA CCCTTAGAAG GGGTTCTGTT GCTTGGATTG GTTCTGGTCC
TGAATTCTTC GTTAGCCTTG CTGATCATTC AGAGTGGAAA CATGAATACA CTGTATTTGG TTCTGTTCTT CCAGAAGACA
TGCATATTGC AGAGAAAATC TCTACACTCC CCACAATAGC TGATGTGTGG AACAATGTCA ACGTGACGGT TTTGAAAAAT
CCTGTTCCTC TGTTGGTCCG TAGAATCCAG AAAAGCCACG TAGATGAAAT TTGA

>Vigan.10G198200.01
MGRRSNGLNS VLAHRLILLF VCLASGGLVY ALLSAVVANG RSRVSDFGRL VDEGMAVQNE GGCCRGIENL ELWGSAVKWG
SEFKFNNSEG CCNACKSMCS GKDGPCLCDT WVFCGDRKAC GSKFGECWLK KQKDSLAPER QEGVPPGEVV GWTSGLIFGK
GEGIIGLETE HGTLHIKLLP DCAPHSVAYI LELLSLHHCA GCQFYRAESR GQSWDSEGNH IENAGFGPPY ALIQGTLEAQ
GTAFNKLPVE DCPTLRRGSV AWIGSGPEFF VSLADHSEWK HEYTVFGSVL PEDMHIAEKI STLPTIADVW NNVNVTVLKN
PVPLLVRRIQ KSHVDEI*