GBrowse Details

Vigan.10G202200.01

Basic Information:
Name: Vigan.10G202200.01
Multiple alignment
Variant Information
Position: Chr10:25448601..25454595 (+ strand)
Length: 5995
Functional Information:
Description: Similar to phosphatidylserine decarboxylase proenzyme-like isoform X3. [XP_004511705.1, Cicer arietinum]
GO: Biological Process: phospholipid biosynthetic process (GO:0008654)
Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609)
InterPro: Phosphatidylserine decarboxylase-related (IPR003817)
Phosphatidylserine decarboxylase (IPR005221)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.24,7.03,6.87,9.53,4.96,5.43,6.08,6.03
Arabidopsis thaliana homolog: AT4G16700.1
Automatic updates:
Name: NM_001253280 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphatidylserine decarboxylase proenzyme-like (LOC100811372), transcript variant 1, mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:25448601..25448791 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr10:25448792..25448981 (+ strand)
Length: 190
Type: CDS
Position: Chr10:25449258..25449346 (+ strand)
Length: 89
Type: CDS
Position: Chr10:25450018..25450071 (+ strand)
Length: 54
Type: CDS
Position: Chr10:25450186..25450251 (+ strand)
Length: 66
Type: CDS
Position: Chr10:25450695..25450755 (+ strand)
Length: 61
Type: CDS
Position: Chr10:25450904..25451013 (+ strand)
Length: 110
Type: CDS
Position: Chr10:25451105..25451355 (+ strand)
Length: 251
Type: CDS
Position: Chr10:25452079..25452185 (+ strand)
Length: 107
Type: CDS
Position: Chr10:25452664..25452731 (+ strand)
Length: 68
Type: CDS
Position: Chr10:25453382..25453459 (+ strand)
Length: 78
Type: CDS
Position: Chr10:25453806..25453928 (+ strand)
Length: 123
Type: CDS
Position: Chr10:25454216..25454374 (+ strand)
Length: 159
Type: CDS
Position: Chr10:25454375..25454595 (+ strand)
Length: 221
Type: three_prime_UTR


>Vigan.10G202200.01
CAAAACACCA ACTCCCTGGA AATGCACGAA ACAGAGATGA AGGAAAAAAA CAAACATCTA CATATTGATA TATGATATGT
GTATAGAGAT AACAGTTAAG TTAAAGAAAA AAACTAAATT AAATTATTTA AAAAAACCAA ATTAAACCAA TTGAACAAAT
ACTAACAAAA AATAAAATAT AATTAAACCC GATGAACACT GACCTACTCT ACGCCTCTTC ACGGCTTGCA AAAATGAAAT
ATAGGGTTTC ACACAAGTTC CCAGTGTTTC CTCACCGCAC CCATCCCTTT CAAAATGCTC GTTACATCAC ATCCTTCACC
AGAAGGTTTC TAATTCGTCG ACCTCGTGCT TCTATCAATG GCGGAAGCGG AAATTCCCAA GGGGAGTCTT TTCTTGTACC
TGGCGCGACG GTTGCTACCA TACTTATGCT TGGCGTTCTC CATGGCCGTA GACTCTATGT TGACAAGAAG ACTGAAGAGA
TGAAGGAAAA AGGAATTGAA GTGGAATTCC AGCCTGATAT AAAGGCTACA TTTTTGAGAT TACTGCCTCT TCGTTCAATT
TCTAGATGCT GGGGATACTT GACAAGCATG GAAATACCAG TTTGGCTGAG GCCCGTTATC TATAAAGCTT GGGCTCGGGC
ATTTCATTCA AATTTAGAAG AAGCTGGTTT ACCTCTAGAC CAGTATGCCA CTTTAAGGGA CTTTTTTGTT CGCACTTTGA
AAGAAGGTTC CAGGCCTATT GATGTTGATC CGCAGTGTCT GGTTAGTCCT GTGGACGGTA CAGTTTTAAG ATTTGGGGAG
TTGAAGGGAG CAGGGGCAAT GATTGAACAA GTTAAAGGGT TTTCATATTC AGTTTTTTCT CTTCTTGGTG CAAGCCCTTT
CCTTCCAACG ACAGCAGATG GTGATGTGCA AAAGAAGCAT AATGAATCAA TAACAACTAC TGAGAAGAGC AAGAAGTCAT
GGTGGAGAGT TTCATTGGCT TCACCAAAAG TTTGGGACCC AAAATCATCA TGCCCAAAGA GAGGACTTTT TTACTGTGTG
GTTTACTTGA AGCCTGGAGA TTACCATCGA ATACACTCCC CAGCTGATTG GAACGTTCTT GTGCGCAGGC ATTTTTATGG
CCGTCTTTAT CCCCTGAATG AACGTGCTAC TAGAACAATT AGAAATCTGT ACATTGAGAA CGAGAGGGTC GTTCTTGAAG
GTCTGTGGCA GGAAGGATTT ATGGCAGTTG CTGCAATTGG TGCGACAAAT ATTGGGTCGA TTGAGCTTTT CATTGAGCCT
GAACTTCATA CAAATAGGCC AATGAAGAAG TTTCTACATT CAGAGCCTCC TGAAGAACGG GTTTATGATT GTGAAGGTGT
AGGCAGAGTG CTCACCAAAG GGGATGAGTT AGGTGCTTTC AACATGGGAT CAACAGTTGT ACTTGTTTTC CAAGCTCCGA
TTTCAAAACT CAATGAGGGC GATTCATCTC AAGAGTTCAG GTTCTGTGTC CAACGTGGGG ATAGAATTTG TGTTGGTGAG
GCTCTAGGAA GGTGGCATAG TTCGTGACAA GGTTAATTTT GTGTGCTGCT CATTCTTATA TTTGTGAATG TACGCTGCAT
CAGACTGTTT GGTATTGAAA CTTCAAAGCA TTTTGGGAAA TCTTAAGGAG AATCATTGGT ACCTCTTACT GGACACTGTG
ATTAGTGATT AATTTATGGG TGTTACATGG TTATTTAGTT TATGGCCGTC TGATTTACTA CGGTAAACAT ATCTAAGAAC
GTTGAATA

>Vigan.10G202200.01
ATGAACACTG ACCTACTCTA CGCCTCTTCA CGGCTTGCAA AAATGAAATA TAGGGTTTCA CACAAGTTCC CAGTGTTTCC
TCACCGCACC CATCCCTTTC AAAATGCTCG TTACATCACA TCCTTCACCA GAAGGTTTCT AATTCGTCGA CCTCGTGCTT
CTATCAATGG CGGAAGCGGA AATTCCCAAG GGGAGTCTTT TCTTGTACCT GGCGCGACGG TTGCTACCAT ACTTATGCTT
GGCGTTCTCC ATGGCCGTAG ACTCTATGTT GACAAGAAGA CTGAAGAGAT GAAGGAAAAA GGAATTGAAG TGGAATTCCA
GCCTGATATA AAGGCTACAT TTTTGAGATT ACTGCCTCTT CGTTCAATTT CTAGATGCTG GGGATACTTG ACAAGCATGG
AAATACCAGT TTGGCTGAGG CCCGTTATCT ATAAAGCTTG GGCTCGGGCA TTTCATTCAA ATTTAGAAGA AGCTGGTTTA
CCTCTAGACC AGTATGCCAC TTTAAGGGAC TTTTTTGTTC GCACTTTGAA AGAAGGTTCC AGGCCTATTG ATGTTGATCC
GCAGTGTCTG GTTAGTCCTG TGGACGGTAC AGTTTTAAGA TTTGGGGAGT TGAAGGGAGC AGGGGCAATG ATTGAACAAG
TTAAAGGGTT TTCATATTCA GTTTTTTCTC TTCTTGGTGC AAGCCCTTTC CTTCCAACGA CAGCAGATGG TGATGTGCAA
AAGAAGCATA ATGAATCAAT AACAACTACT GAGAAGAGCA AGAAGTCATG GTGGAGAGTT TCATTGGCTT CACCAAAAGT
TTGGGACCCA AAATCATCAT GCCCAAAGAG AGGACTTTTT TACTGTGTGG TTTACTTGAA GCCTGGAGAT TACCATCGAA
TACACTCCCC AGCTGATTGG AACGTTCTTG TGCGCAGGCA TTTTTATGGC CGTCTTTATC CCCTGAATGA ACGTGCTACT
AGAACAATTA GAAATCTGTA CATTGAGAAC GAGAGGGTCG TTCTTGAAGG TCTGTGGCAG GAAGGATTTA TGGCAGTTGC
TGCAATTGGT GCGACAAATA TTGGGTCGAT TGAGCTTTTC ATTGAGCCTG AACTTCATAC AAATAGGCCA ATGAAGAAGT
TTCTACATTC AGAGCCTCCT GAAGAACGGG TTTATGATTG TGAAGGTGTA GGCAGAGTGC TCACCAAAGG GGATGAGTTA
GGTGCTTTCA ACATGGGATC AACAGTTGTA CTTGTTTTCC AAGCTCCGAT TTCAAAACTC AATGAGGGCG ATTCATCTCA
AGAGTTCAGG TTCTGTGTCC AACGTGGGGA TAGAATTTGT GTTGGTGAGG CTCTAGGAAG GTGGCATAGT TCGTGA

>Vigan.10G202200.01
MNTDLLYASS RLAKMKYRVS HKFPVFPHRT HPFQNARYIT SFTRRFLIRR PRASINGGSG NSQGESFLVP GATVATILML
GVLHGRRLYV DKKTEEMKEK GIEVEFQPDI KATFLRLLPL RSISRCWGYL TSMEIPVWLR PVIYKAWARA FHSNLEEAGL
PLDQYATLRD FFVRTLKEGS RPIDVDPQCL VSPVDGTVLR FGELKGAGAM IEQVKGFSYS VFSLLGASPF LPTTADGDVQ
KKHNESITTT EKSKKSWWRV SLASPKVWDP KSSCPKRGLF YCVVYLKPGD YHRIHSPADW NVLVRRHFYG RLYPLNERAT
RTIRNLYIEN ERVVLEGLWQ EGFMAVAAIG ATNIGSIELF IEPELHTNRP MKKFLHSEPP EERVYDCEGV GRVLTKGDEL
GAFNMGSTVV LVFQAPISKL NEGDSSQEFR FCVQRGDRIC VGEALGRWHS S*