VIGGS:GBrowse

Vigan.10G202800.01

Basic Information:

Name:	Vigan.10G202800.01 Multiple alignment Variant Information
Position:	Chr10:25491500..25493854 (- strand)
Length:	2355

Functional Information:

Description:	Similar to Tonoplast intrinsic protein. [G2XKY2, Glycine soja]
GO:	Biological Process: transport (GO:0006810)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: transporter activity (GO:0005215)
InterPro:	Major intrinsic protein (IPR000425)
	Major intrinsic protein, conserved site (IPR022357)
	Aquaporin-like (IPR023271)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.34,0.13,46.92,15.77,28.00,31.30,732.44,79.29
Arabidopsis thaliana homolog:	AT5G47450.1

Automatic updates:

Name:	NM_001251409 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527333 (LOC100527333), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:25491500..25491819 (- strand)
Length:	320
Type:	three_prime_UTR

Position:	Chr10:25491820..25492194 (- strand)
Length:	375
Type:	CDS

Position:	Chr10:25492287..25492534 (- strand)
Length:	248
Type:	CDS

Position:	Chr10:25493654..25493780 (- strand)
Length:	127
Type:	CDS

Position:	Chr10:25493781..25493854 (- strand)
Length:	74
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G202800.01
TGAGGCAAAG TAGTAGCAGT AGTTAATAAT AGAAAGATAG GTTGTTTGGT TTTGAAGTAA GGGAGGTGCC AAAAATGGTG
AAGATCACTC TTGGTAGCTT TGAAGACTCT TTTAGCGCTG CCTCTCTCAA GGCCTATTTT GCAGAGCTTC ATGCCACTCT
AATTTTCGTC TTCGCTGGTG TTGGATCAGC CATTGCTTAC AACGAGGTCA CGAAAGATGC TGCATTGGAT CCAACGGGGC
TGGTGGCAGT AGCGGTGGCA CACGCATTCG CACTGTTTGT AGGTGTGTCT GTTGCAGCCA ACAGCTCAGG TGGACATTTG
AACCCAGCTG TCACATTTGG ATTGGCTGTC GGAGGAAACA TCACCCTCCT AACTGGTTTC TTGTACTGGG TTGCTCAATT
GCTGGGTTCT ATCCTTGCAT GTCTCCTCCT CAATTTGGTT ACCGCCAAGA GCATTCCAAC CCATGGACTG GCTTATGGTG
TGAACGCTTT CCAAGGTGTG GTGTTTGAAA TTATTATCAC TTTTGCGTTG GTTTACACAG TGTATGCAAC TGCAGCTGAC
CCTAAAAAGG GCTCATTGGG CACCATTGCA CCCATTGCTA TTGGGTTCAT TGTGGGTGCC AACATCTTAG CTGCTGGCCC
ATTCAGTGGT GGGTCCATGA ACCCGGCCCG CTCATTTGGC CCAGCTGTGG TTAGTGGAAA CTTCGCTGAT AACTGGATCT
ACTGGGTTGG CCCATTGATT GGAGGAGGTT TGGCTGGGCT CATTTATGGA GATGTCTTCA TTGGTTCCTA TGCCGCTGTC
CCAGCCTCTG AAACCTATCC TTAAAAAACA TATCTTATTG TTCTCCTTTG TTCCTTCAGC TTTTTCTCTT TCTTCAACGT
TTGCTGTCCT GTACCTTCAA TTTTCCTTTC ACCGCTTGTA ATAATTCTGT AAATTTTAAA TTCAACTCGA AGCATGCCTT
GTTGGAACTC CCGTTATTTT TCCGTTTTCA TCCTAACGGT AATAACAACC GCGAGCGAAT AACTTTTTTG ACACAGTCAA
ACTGACCAGT GGCTTTATTG CCTCTGTAAT CTAAAACGTT GCTATATTCT GAAACATAAC TACTAACAAA ACTTTTCCTC
GGATCTGTAA TCCTTGTCCT AATT

[show][hide][copy]CDS

>Vigan.10G202800.01
ATGGTGAAGA TCACTCTTGG TAGCTTTGAA GACTCTTTTA GCGCTGCCTC TCTCAAGGCC TATTTTGCAG AGCTTCATGC
CACTCTAATT TTCGTCTTCG CTGGTGTTGG ATCAGCCATT GCTTACAACG AGGTCACGAA AGATGCTGCA TTGGATCCAA
CGGGGCTGGT GGCAGTAGCG GTGGCACACG CATTCGCACT GTTTGTAGGT GTGTCTGTTG CAGCCAACAG CTCAGGTGGA
CATTTGAACC CAGCTGTCAC ATTTGGATTG GCTGTCGGAG GAAACATCAC CCTCCTAACT GGTTTCTTGT ACTGGGTTGC
TCAATTGCTG GGTTCTATCC TTGCATGTCT CCTCCTCAAT TTGGTTACCG CCAAGAGCAT TCCAACCCAT GGACTGGCTT
ATGGTGTGAA CGCTTTCCAA GGTGTGGTGT TTGAAATTAT TATCACTTTT GCGTTGGTTT ACACAGTGTA TGCAACTGCA
GCTGACCCTA AAAAGGGCTC ATTGGGCACC ATTGCACCCA TTGCTATTGG GTTCATTGTG GGTGCCAACA TCTTAGCTGC
TGGCCCATTC AGTGGTGGGT CCATGAACCC GGCCCGCTCA TTTGGCCCAG CTGTGGTTAG TGGAAACTTC GCTGATAACT
GGATCTACTG GGTTGGCCCA TTGATTGGAG GAGGTTTGGC TGGGCTCATT TATGGAGATG TCTTCATTGG TTCCTATGCC
GCTGTCCCAG CCTCTGAAAC CTATCCTTAA

[show][hide][copy]PROTEIN

>Vigan.10G202800.01
MVKITLGSFE DSFSAASLKA YFAELHATLI FVFAGVGSAI AYNEVTKDAA LDPTGLVAVA VAHAFALFVG VSVAANSSGG
HLNPAVTFGL AVGGNITLLT GFLYWVAQLL GSILACLLLN LVTAKSIPTH GLAYGVNAFQ GVVFEIIITF ALVYTVYATA
ADPKKGSLGT IAPIAIGFIV GANILAAGPF SGGSMNPARS FGPAVVSGNF ADNWIYWVGP LIGGGLAGLI YGDVFIGSYA
AVPASETYP*