GBrowse Details

Vigan.10G208500.01

Basic Information:
Name: Vigan.10G208500.01
Multiple alignment
Variant Information
Position: Chr10:25901811..25905393 (- strand)
Length: 3583
Functional Information:
Description: Similar to CPD photolyase. [B1B538, Glycine max]
GO: Biological Process: DNA repair (GO:0006281)
Molecular Function: deoxyribodipyrimidine photo-lyase activity (GO:0003904)
Molecular Function: DNA photolyase activity (GO:0003913)
InterPro: DNA photolyase, FAD-binding/Cryptochrome, C-terminal (IPR005101)
DNA photolyase, N-terminal (IPR006050)
DNA photolyase, class 2 (IPR008148)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.91,6.39,25.31,22.32,1.51,2.55,1.23,19.78
Arabidopsis thaliana homolog: AT1G12370.2
Automatic updates:
Name: NM_001251781 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CPD photolyase (PHR), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:25901811..25901968 (- strand)
Length: 158
Type: three_prime_UTR
Position: Chr10:25901969..25902157 (- strand)
Length: 189
Type: CDS
Position: Chr10:25902415..25902486 (- strand)
Length: 72
Type: CDS
Position: Chr10:25902581..25902662 (- strand)
Length: 82
Type: CDS
Position: Chr10:25903175..25903233 (- strand)
Length: 59
Type: CDS
Position: Chr10:25903470..25903506 (- strand)
Length: 37
Type: CDS
Position: Chr10:25903571..25903728 (- strand)
Length: 158
Type: CDS
Position: Chr10:25903861..25904101 (- strand)
Length: 241
Type: CDS
Position: Chr10:25904180..25904529 (- strand)
Length: 350
Type: CDS
Position: Chr10:25904976..25905293 (- strand)
Length: 318
Type: CDS
Position: Chr10:25905294..25905393 (- strand)
Length: 100
Type: five_prime_UTR


>Vigan.10G208500.01
CAAAGAGAGA GTGGAACCAC GTACGTTAGT TTGAAACCAC ACATGGAACT GTTGAATTTC CCTCCAAGAC TTGTGGAGTA
GAGGCGCTTG GTTGAACACG ATGGCTTCCA AATTAGCGTC GCCGATGACG GTTCAGGCAG GTCGGATTCG GACCCTGAAA
AGCGGTTCCT CTGGAGAAGG GGGTTCGGGT CCCGTTGTGT ACTGGATGTT CAGAGATCAA CGGGTGAGAG ACAACTGGGC
TCTGATCCAC GCCGTTGCTG AGGCCAACAA AGCCAACATT CCCGTTGCCG TTGTTTTCAA TCTATTCGAC AGCTTTCTCG
GCGCCAAATC CCGTCACCTA GGGTTTATGC TCAGGGGCTT GCGCCAATTG TGCCACCGTA TGCAAAATAC TCTTCAAATT
CCATTTTTCT TGTTCCAGGG AGAGGCGGAG GAGACCGTGA CAGCGTTTCT TAGAGAATGT GGAGCTTCAC TTTTGGTAAC
GGATTTCTCA CCATTGCGGG AAATTCGAAG GTGTAAAGAA GAGATTTGCA AGAGGGTAAG CGATTCAGTT ACGGTGCATG
AAGTGGACGC TCACAACGTT GTGCCACTTT GGGTTGCCTC TGATAAATTG GAGTACAGTG CTAAGACAAT CAGGACAAAG
ATAAACAAAA GGCTTTCTGA GTATCTCATC GATTTCCCTG ACGTTGAAGA TAATCTACCA ACTAGGATGT GGGTCCTTCC
CGAGAACCAT TCCGTTGACT GGGATGGTCT CATTGCTGAT GTGTTAAGGA GAGGAGCTGA GGTTCCTGAA GTTGATTGGT
GTGAGCCGGG GGAAATTGCG GCAAGGGATG TGTTGATGGG AAGTGAAAAT GGATTCTTGA CAAAAAGGTT GAAAGGTTAC
TCTGTAGATC GCAACAACCC GTGCAACCCC AATGCACTTT CTGGTTTATC TCCCTATTTG CATTTTGGAC AGATATCGGC
TCAGCGATGT GCTTTTGAAG CACGTAAGCG GCGAAATTCA CATCCTCAAG CCATTGATAC TTTCTTGGAG GAGTTGATTG
TGCGGAGAGA GCTTGCTGAT AACTATTGCT TCTACGAGCC CCACTATGAT TCAATAAAAG GAGCATGGGG TTGGGCTCGG
AACACCTTAA CGGAACATGC CACTGATAAG CGTGAACATA TTTACACGAG GGAACAATTG GAGAAGGCAC AAACTTCTGA
TCCTCTCTGG AATGCTTCTC AGCTGGAGAT GGTTCACAAG GGGAAAATGC ACGGATTTAT GCGAATGTAT TGGGCAAAGA
AGATACTTGA GTGGACACGA GGACCTGAAG AAGCCCTTGA GATATCTCTG TATTTAAATG ACAAGTATGA ATTAGATGGG
CGAGATCCAA ATGGTTATGT TGGCTGTATG TGGTCGATAT GCGGGGTTCA TGATCAGGGG TGGAAGGAGC GGCCCATTTT
TGGGAAAATT CGCTACATGA ACTATGCAGG CTGCAAAAGA AAATTTGATG TCGATAAATA CATTGCATAT GTCAATAAAT
TAGTTCGTGA TCTTAAAAAG AGAAAGGCTG AAAACTTGCC GTCTGAAAGG GAAAAAGTTC TTCGCAGTTG TGTTCCAGAA
GATTGAAGAA GTGAACTAGG CATATCATAT TGTCATGTAT TTAGTCACTA ATATTTGCAC TGCGCTCTTT AAGATACTTT
TATACAATCA CTATTGGCTT TCAATTTTTT TATCACAGCA AACAAAAAAA CAATATAAAA AAAATAGAAA AGAGTCGACA
CCCA

>Vigan.10G208500.01
ATGGCTTCCA AATTAGCGTC GCCGATGACG GTTCAGGCAG GTCGGATTCG GACCCTGAAA AGCGGTTCCT CTGGAGAAGG
GGGTTCGGGT CCCGTTGTGT ACTGGATGTT CAGAGATCAA CGGGTGAGAG ACAACTGGGC TCTGATCCAC GCCGTTGCTG
AGGCCAACAA AGCCAACATT CCCGTTGCCG TTGTTTTCAA TCTATTCGAC AGCTTTCTCG GCGCCAAATC CCGTCACCTA
GGGTTTATGC TCAGGGGCTT GCGCCAATTG TGCCACCGTA TGCAAAATAC TCTTCAAATT CCATTTTTCT TGTTCCAGGG
AGAGGCGGAG GAGACCGTGA CAGCGTTTCT TAGAGAATGT GGAGCTTCAC TTTTGGTAAC GGATTTCTCA CCATTGCGGG
AAATTCGAAG GTGTAAAGAA GAGATTTGCA AGAGGGTAAG CGATTCAGTT ACGGTGCATG AAGTGGACGC TCACAACGTT
GTGCCACTTT GGGTTGCCTC TGATAAATTG GAGTACAGTG CTAAGACAAT CAGGACAAAG ATAAACAAAA GGCTTTCTGA
GTATCTCATC GATTTCCCTG ACGTTGAAGA TAATCTACCA ACTAGGATGT GGGTCCTTCC CGAGAACCAT TCCGTTGACT
GGGATGGTCT CATTGCTGAT GTGTTAAGGA GAGGAGCTGA GGTTCCTGAA GTTGATTGGT GTGAGCCGGG GGAAATTGCG
GCAAGGGATG TGTTGATGGG AAGTGAAAAT GGATTCTTGA CAAAAAGGTT GAAAGGTTAC TCTGTAGATC GCAACAACCC
GTGCAACCCC AATGCACTTT CTGGTTTATC TCCCTATTTG CATTTTGGAC AGATATCGGC TCAGCGATGT GCTTTTGAAG
CACGTAAGCG GCGAAATTCA CATCCTCAAG CCATTGATAC TTTCTTGGAG GAGTTGATTG TGCGGAGAGA GCTTGCTGAT
AACTATTGCT TCTACGAGCC CCACTATGAT TCAATAAAAG GAGCATGGGG TTGGGCTCGG AACACCTTAA CGGAACATGC
CACTGATAAG CGTGAACATA TTTACACGAG GGAACAATTG GAGAAGGCAC AAACTTCTGA TCCTCTCTGG AATGCTTCTC
AGCTGGAGAT GGTTCACAAG GGGAAAATGC ACGGATTTAT GCGAATGTAT TGGGCAAAGA AGATACTTGA GTGGACACGA
GGACCTGAAG AAGCCCTTGA GATATCTCTG TATTTAAATG ACAAGTATGA ATTAGATGGG CGAGATCCAA ATGGTTATGT
TGGCTGTATG TGGTCGATAT GCGGGGTTCA TGATCAGGGG TGGAAGGAGC GGCCCATTTT TGGGAAAATT CGCTACATGA
ACTATGCAGG CTGCAAAAGA AAATTTGATG TCGATAAATA CATTGCATAT GTCAATAAAT TAGTTCGTGA TCTTAAAAAG
AGAAAGGCTG AAAACTTGCC GTCTGAAAGG GAAAAAGTTC TTCGCAGTTG TGTTCCAGAA GATTGA

>Vigan.10G208500.01
MASKLASPMT VQAGRIRTLK SGSSGEGGSG PVVYWMFRDQ RVRDNWALIH AVAEANKANI PVAVVFNLFD SFLGAKSRHL
GFMLRGLRQL CHRMQNTLQI PFFLFQGEAE ETVTAFLREC GASLLVTDFS PLREIRRCKE EICKRVSDSV TVHEVDAHNV
VPLWVASDKL EYSAKTIRTK INKRLSEYLI DFPDVEDNLP TRMWVLPENH SVDWDGLIAD VLRRGAEVPE VDWCEPGEIA
ARDVLMGSEN GFLTKRLKGY SVDRNNPCNP NALSGLSPYL HFGQISAQRC AFEARKRRNS HPQAIDTFLE ELIVRRELAD
NYCFYEPHYD SIKGAWGWAR NTLTEHATDK REHIYTREQL EKAQTSDPLW NASQLEMVHK GKMHGFMRMY WAKKILEWTR
GPEEALEISL YLNDKYELDG RDPNGYVGCM WSICGVHDQG WKERPIFGKI RYMNYAGCKR KFDVDKYIAY VNKLVRDLKK
RKAENLPSER EKVLRSCVPE D*