GBrowse Details

Vigan.10G209600.01

Basic Information:
Name: Vigan.10G209600.01
Multiple alignment
Variant Information
Position: Chr10:26000436..26002945 (- strand)
Length: 2510
Functional Information:
Description: Similar to Ycf49-like protein. [G7KEW0, Medicago truncatula]
InterPro: Uncharacterised protein family Ycf49 (IPR019634)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.32,5.15,5.24,19.33,8.54,5.36,3.53,5.24
Arabidopsis thaliana homolog: AT4G22830.2
Automatic updates:
Name: NM_001249682 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306551 (LOC100306551), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26000436..26000734 (- strand)
Length: 299
Type: three_prime_UTR
Position: Chr10:26000735..26000830 (- strand)
Length: 96
Type: CDS
Position: Chr10:26002228..26002296 (- strand)
Length: 69
Type: CDS
Position: Chr10:26002391..26002469 (- strand)
Length: 79
Type: CDS
Position: Chr10:26002596..26002852 (- strand)
Length: 257
Type: CDS
Position: Chr10:26002853..26002945 (- strand)
Length: 93
Type: five_prime_UTR


>Vigan.10G209600.01
AGAAACTAAA TGAAAGAAGG AGAAAGAATG TTATCCAAAA CCAAGCTGCA ACATTAGAAG CTGCAGTTAC AGTTACAGTC
TCCAACTCCG GCCATGGCGG CGACAACGTT CTACTTGGCA AAACCATTTT GCACTTCCAA AATTCCTTTG CCAAGAGTGA
GCGACAGTGG AATTGGAACC GTAAAGTGTG AAATTCAAAC CAAATTGAAA ACGGGTTTCC TGGGACTGGG TCTGTTCCAC
TTCCTCAACT TTGTCGAACC AGCTGCATCT CTGCAACTGC AACTTCAGGA ACCTTCTAAT GCCCTCTCAC TGCCTACATG
GGCCATTCAC GTCTCCAGTG TCGCTGAATG GATTATAGCC ATGGCTTTGG TGTGGCAATA TGGGCACAAA TCTAGATACC
CTGCTTGGAA GGGCCTTTCT TGGGGTATGG TACCTCTACT TGGTGGAGCT TTTTGCGCGT GTACATGGCA TTTCTTTTAT
AACTCTGAAA CTCTTGAGGT ATTGGTGGCT CTTCAAGCGG CACTGACTGT TATAGGAAAT GCCACAATGT GCATAGCTGC
ATATAGGATA TACAAATCAT CCCAAGGCTC CTAGAACTTT TGAATTGTAT GTACTTGGTT ATCTGGAACC ATGTATATAG
GTCTGAATGA AAGTCAAAGG CTTCTTCTGC TGATTGGTAA CTTATCCTTG ATCTGGAAGA ATGTGAGAAG AGTTCGCTGG
CATACCAAAA TATTTAATGA CAGATAGAAT CCATATATCC TTATTTATAA GATAAACATG CTAGGAGATG ATCATTCTTT
CTGAATTTTA TGCACAGTAA TCTGTTCATT AATTTTATGC GCAAGTTTCC CTTACCTGAA GAAGTCACAG TTCAACTTTT
AATTACTTTT GAA

>Vigan.10G209600.01
ATGGCGGCGA CAACGTTCTA CTTGGCAAAA CCATTTTGCA CTTCCAAAAT TCCTTTGCCA AGAGTGAGCG ACAGTGGAAT
TGGAACCGTA AAGTGTGAAA TTCAAACCAA ATTGAAAACG GGTTTCCTGG GACTGGGTCT GTTCCACTTC CTCAACTTTG
TCGAACCAGC TGCATCTCTG CAACTGCAAC TTCAGGAACC TTCTAATGCC CTCTCACTGC CTACATGGGC CATTCACGTC
TCCAGTGTCG CTGAATGGAT TATAGCCATG GCTTTGGTGT GGCAATATGG GCACAAATCT AGATACCCTG CTTGGAAGGG
CCTTTCTTGG GGTATGGTAC CTCTACTTGG TGGAGCTTTT TGCGCGTGTA CATGGCATTT CTTTTATAAC TCTGAAACTC
TTGAGGTATT GGTGGCTCTT CAAGCGGCAC TGACTGTTAT AGGAAATGCC ACAATGTGCA TAGCTGCATA TAGGATATAC
AAATCATCCC AAGGCTCCTA G

>Vigan.10G209600.01
MAATTFYLAK PFCTSKIPLP RVSDSGIGTV KCEIQTKLKT GFLGLGLFHF LNFVEPAASL QLQLQEPSNA LSLPTWAIHV
SSVAEWIIAM ALVWQYGHKS RYPAWKGLSW GMVPLLGGAF CACTWHFFYN SETLEVLVAL QAALTVIGNA TMCIAAYRIY
KSSQGS*