VIGGS:GBrowse

Vigan.10G210900.01

Basic Information:

Name:	Vigan.10G210900.01 Multiple alignment Variant Information
Position:	Chr10:26100738..26106576 (+ strand)
Length:	5839

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JA22, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Homeobox domain (IPR001356)
	ELK (IPR005539)
	KNOX1 (IPR005540)
	KNOX2 (IPR005541)
	Homeobox KN domain (IPR008422)
	Homeodomain-like (IPR009057)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:4.17,5.49,19.44,41.26,2.33,19.49,14.87,17.46
Arabidopsis thaliana homolog:	AT1G62990.1

Automatic updates:

Name:	NM_001255349 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max homeobox protein knotted-1-like 7-like (LOC100782179), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:26100738..26101345 (+ strand)
Length:	608
Type:	five_prime_UTR

Position:	Chr10:26101346..26101618 (+ strand)
Length:	273
Type:	CDS

Position:	Chr10:26101708..26101828 (+ strand)
Length:	121
Type:	CDS

Position:	Chr10:26105371..26105561 (+ strand)
Length:	191
Type:	CDS

Position:	Chr10:26105668..26105799 (+ strand)
Length:	132
Type:	CDS

Position:	Chr10:26106058..26106198 (+ strand)
Length:	141
Type:	CDS

Position:	Chr10:26106199..26106576 (+ strand)
Length:	378
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G210900.01
GCCTAAAAAT CCATTACTGT TCCAGATAAA AAATAAAAAA GAATAAAAAA AAATAAATAA AAGAAGAGGA AAAAGAAATG
AAGGTGTCAG GTGACAGAAG CAGCTTTATC TTCTTTTTCT GACCTCGCTT CCATCCCCTT TCATAGTAAT GATTCCGCAG
CTTACTCTTT TCTCTGTCTC TCTTCCTCTT TCTATTCTCT CTCTCTCTTA AATAAAGAAA ACAAAACTTC AATCTCTCTC
ACACAAACAC ACAACACAAG GCACAGCGCA GAAATCAACC GTGTTTAATG CCTTTGCTTC ACCCTCTTTC TCTGTGTATG
TAAAATCTTT GTTTTTATCA GAGGTCCTGC AGAAAGTTGT GTCTCAGATC CCTATATACA CCGAAAACGA TACAACTCTG
TGCACTCTGT ACTCTGCTTC TTTCTCTCTC TCTATCTCTG AAAATCATCA TTTACAATTT TACACACAAC CTATTACCGA
ATAGGGTGGT CCTCAACCTC GCTCTTTTTT CTTTTTTTTC CCTCTGCCTT CTGCCTGCCC TATATTATTC TGCTCTGCCT
TTATCAATCC ATCCATCGCG CTTCTCTTTC TCTCTAAAAA TTGAGAAAAT GCAAGAACCG AGACTGGGAA TGATGGGCGG
GTTAAGCGGC GAGGTCTCCG GCGATCACCA CCGTCAACTG AAGGCGGAGA TAGCCACACA TCCGCTGTAC GAGCAGCTCC
TGGCTGCACA CGTCGCATGC CTCCGTGTGG CCACTCCCAT CGACCAACTT CCTCTCATCG ATGCTCAGCT ATCTCACTCT
CACCATCTTC TACGATCTTA TGTCTCTCAC CATACCCACT CTCTCTCCCC CAATGACCGC CAAGAACTCG ACAACTTCCT
GGCACAGTAT TTGATAGTTT TGTGTACTTT CAAAGAACAA CTTCAGCAAC ATGTCAGAGT CCACGCCGTT GAGGCTGTCA
TGGCCTGCCG CGATATCGAA AATACCTTAC AAGCTCTCAC AGGAGTGAGT CTGGGAGAAG GAACTGGTGC AACAATGTCA
GATGATGAAG ATGAGTTACA GATGGATTTT TCTTTGGATC AATCCAGCGC TGAAGGGCAT GACATGATGG GATTTGGTCC
CTTACTTCCT ACAGAATCTG AAAGGTCACT GATGGAGAGA GTTCGTCAGG AACTAAAGAT TGAGCTGAAG CAGGGTTTCA
AGTCAAGAAT TGAAGATGTC AGGGAGGAAA TATTAAGGAA ACGTAGAGCT GGGAAATTAC CAGGTGACAC AACTTCTGTG
TTAAAGAATT GGTGGCAGCA ACATGCAAAG TGGCCTTATC CTACTGAAGA TGACAAGGCA AAACTTGTGG AGGAGACAGG
GTTGCAGCTG AAGCAAATTA ATAATTGGTT CATCAATCAA AGGAAACGCA ACTGGCACAG CAATTCTCAA TCGGTTACCT
CTTTGAAGTC GAAACGCAAG AGGTAGACAT ATTTTGTCTC AACTATGTGG CACAGCTAGC AACACAACTT ATATAAGGAC
TTACTATATA TATATATATG CTTATTTCTG ATAGAGTCTA GTCTCCCTAA GGATTCCGAT CAGATGCACA AGATAGTAGA
TGGGTTACTG TAATGTAAGA TAGCTGAAAA AAAAAGGCTG CAAGTAAATT TGTGGAATTT AACGTATGAA AACTTCTGTT
TTAGGTGTGG TTATGCCTCT CTTTTAACGA TCTTTGTAAA TTGTTTGCTA CTTTTCTGAC CGACGACAGA GTTATTACTG
TCACTACACA CATCATTGGA AGATTTTCGC GGTTCTTTAC AAATTATATA TGTTCTTTGA TCCTACATAT TTGATCTCTT
ATAC

[show][hide][copy]CDS

>Vigan.10G210900.01
ATGCAAGAAC CGAGACTGGG AATGATGGGC GGGTTAAGCG GCGAGGTCTC CGGCGATCAC CACCGTCAAC TGAAGGCGGA
GATAGCCACA CATCCGCTGT ACGAGCAGCT CCTGGCTGCA CACGTCGCAT GCCTCCGTGT GGCCACTCCC ATCGACCAAC
TTCCTCTCAT CGATGCTCAG CTATCTCACT CTCACCATCT TCTACGATCT TATGTCTCTC ACCATACCCA CTCTCTCTCC
CCCAATGACC GCCAAGAACT CGACAACTTC CTGGCACAGT ATTTGATAGT TTTGTGTACT TTCAAAGAAC AACTTCAGCA
ACATGTCAGA GTCCACGCCG TTGAGGCTGT CATGGCCTGC CGCGATATCG AAAATACCTT ACAAGCTCTC ACAGGAGTGA
GTCTGGGAGA AGGAACTGGT GCAACAATGT CAGATGATGA AGATGAGTTA CAGATGGATT TTTCTTTGGA TCAATCCAGC
GCTGAAGGGC ATGACATGAT GGGATTTGGT CCCTTACTTC CTACAGAATC TGAAAGGTCA CTGATGGAGA GAGTTCGTCA
GGAACTAAAG ATTGAGCTGA AGCAGGGTTT CAAGTCAAGA ATTGAAGATG TCAGGGAGGA AATATTAAGG AAACGTAGAG
CTGGGAAATT ACCAGGTGAC ACAACTTCTG TGTTAAAGAA TTGGTGGCAG CAACATGCAA AGTGGCCTTA TCCTACTGAA
GATGACAAGG CAAAACTTGT GGAGGAGACA GGGTTGCAGC TGAAGCAAAT TAATAATTGG TTCATCAATC AAAGGAAACG
CAACTGGCAC AGCAATTCTC AATCGGTTAC CTCTTTGAAG TCGAAACGCA AGAGGTAG

[show][hide][copy]PROTEIN

>Vigan.10G210900.01
MQEPRLGMMG GLSGEVSGDH HRQLKAEIAT HPLYEQLLAA HVACLRVATP IDQLPLIDAQ LSHSHHLLRS YVSHHTHSLS
PNDRQELDNF LAQYLIVLCT FKEQLQQHVR VHAVEAVMAC RDIENTLQAL TGVSLGEGTG ATMSDDEDEL QMDFSLDQSS
AEGHDMMGFG PLLPTESERS LMERVRQELK IELKQGFKSR IEDVREEILR KRRAGKLPGD TTSVLKNWWQ QHAKWPYPTE
DDKAKLVEET GLQLKQINNW FINQRKRNWH SNSQSVTSLK SKRKR*