GBrowse Details

Vigan.10G211100.01

Basic Information:
Name: Vigan.10G211100.01
Multiple alignment
Variant Information
Position: Chr10:26113852..26119294 (- strand)
Length: 5443
Functional Information:
Description: Similar to Uncharacterized protein. [I1LGI7, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: isoprenoid biosynthetic process (GO:0008299)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421)
InterPro: Hydroxymethylglutaryl-coenzyme A synthase, active site (IPR000590)
Hydroxymethylglutaryl-CoA synthase, eukaryotic (IPR010122)
Hydroxymethylglutaryl-coenzyme A synthase, N-terminal (IPR013528)
Hydroxymethylglutaryl-coenzyme A synthase C-terminal (IPR013746)
Thiolase-like, subgroup (IPR016038)
Thiolase-like (IPR016039)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.41,1.99,98.43,14.67,55.37,38.14,54.01,28.82
Arabidopsis thaliana homolog: AT4G11820.2
Automatic updates:
Name: NM_001360247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative hydroxymethylglutaryl-CoA synthase (LOC100782595), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:26113852..26114211 (- strand)
Length: 360
Type: three_prime_UTR
Position: Chr10:26114212..26114439 (- strand)
Length: 228
Type: CDS
Position: Chr10:26115100..26115249 (- strand)
Length: 150
Type: CDS
Position: Chr10:26115338..26115478 (- strand)
Length: 141
Type: CDS
Position: Chr10:26115651..26115738 (- strand)
Length: 88
Type: CDS
Position: Chr10:26115822..26115877 (- strand)
Length: 56
Type: CDS
Position: Chr10:26116061..26116136 (- strand)
Length: 76
Type: CDS
Position: Chr10:26116574..26116647 (- strand)
Length: 74
Type: CDS
Position: Chr10:26116874..26117032 (- strand)
Length: 159
Type: CDS
Position: Chr10:26117219..26117362 (- strand)
Length: 144
Type: CDS
Position: Chr10:26117666..26117798 (- strand)
Length: 133
Type: CDS
Position: Chr10:26118205..26118311 (- strand)
Length: 107
Type: CDS
Position: Chr10:26118952..26119014 (- strand)
Length: 63
Type: CDS
Position: Chr10:26119015..26119294 (- strand)
Length: 280
Type: five_prime_UTR


>Vigan.10G211100.01
ACGCAGTATG CGTTTATTCA CTGGGAGATG CATGAAAGAG GGGACCCTTG GGTACACCTC ACCGCACCAG ATCATTTGGG
GTTGGTGGCT GTTTCCCTAA CGAATTTTCT TTATATATAT ATATATGCTA AGTTTCCAAC ACTTCCCATG TGAGTGAGTC
ACTGAACAAC TCACTACTTC CTTTCTCTCT CTTTCTTTGC GATTTTGTGT GTACGGTTCT ATTCGATCAA GAGAGCATTC
ATTTTTTTGA TTGTTGGCAT TTGGAAGCGG TGAGCAGAAA ATGGCAAAGA ACGTCGGAAT TCTCGCCATT GACATCTACT
TTCCTCCAGC ATGCGTTCAG CAGGAAGCAT TGGAGACTCA CGATGGTGCC AGCAAAGGGA AGTACACCAT TGGGCTTGGC
CAAGATTGCA TGTCGTTCTG TACCGAAGTG GAAGATGTCA TCTCAATGAG TTTGACAGTG GTTACTTCTC TTCTTGAGAA
GTATGGAATT GATGCTAAAC AAATTGGTCG CCTCGAAGTT GGAAGTGAGA CTGTGATAGA CAAAAGCAAA TCCATCAAAA
CATTCCTTAT GCAGATCTTT GAGAAATGCG GAAATACTGA CATTGAGGGT GTTGATTCAA CTAATGCATG CTATGGGGGA
ACTGCCGCCC TGTTTAACTG TGTCAATTGG GTGGAGAGCA ACTCATGGGA TGGACGCTAT GGACTTGTTG TCTGCACTGA
CAGTGCTGTC TATGCTGAAG GACCTGCTCG ACCTACTGGA GGAGCTGCTG CTATTGCCAT GCTAATTGGT CCTGATGCTC
CCATTTCTTT TGAAAGCAAA TATAGAGGAA GTCATATGTC TCATGTTTAT GATTTTTACA AGCCGAATCT TGCTAGTGAA
TATCCAGTTG TTGATGGAAA GCTGTCACAA ACTTGTTACC TCATGGCTCT TGATTCTTGC TACAAGAGTT TCTGTCACAA
GTATGAGAAA TTCGAGGGAA AACAATTTTC TCTTTCTGAT GCGGCATACT TTGTTTTTCA CTCACCTTAC AACAAGCTAG
TACAGAAGAG TTTTGCACGG CTGTATTTCA ATGACTTTTT GAGGAATGCC AGCTCTGTGG ATGAGAATGC CAAAGAAAAG
CTGGGACCTT TTTCAAATTT ATCTGGTGAT GAGAGTTACC AAAGTCGGGA TCTTGAAAAG GCATCTCAGC AAGCTGCGAA
GCCTCTGTAT GACGAGAAGG TACAGCCAAC AACCTTGATT CCAAAGCAAG TCGGCAACAT GTACACTGCG TCACTCTATG
CAGCATTTGC ATCCCTTATT CACAACAAAC ATAGCACATT GGCTGGTAAG AGGGTGATAT TATTCTCATA CGGAAGTGGC
TTAACTTCCA CAATATTTTC TTTGCAATTG CGAGATATTC AACATCCATT TAGCTTGTCA AACATCGCTA AAGTGATGGA
TGTCGATGGA AAATTGAAGT CAAGACACGA GTTTCCACCG GAGAAGTTTG TTGAAACCCT GAAGGTAATG GAGCATAGGT
ATGGTGCTAA GGAATTTGTG ACAAGCAAGG ACAGTAGCCT TTTATCTCCG GGCACATTCT ATCTCACTGA AGTTGACTCC
ATGTATCGGA GATTTTATTC AGAGAAAACT AAAGAAAGCC TTTCTACTCC CGCTGTGAAC GGTGTGATTG CTAATGGTGT
GATCGCTAAT GGCCACTAAT GTTGAAATTG TACAATGATA GCCAACTTTG CCTACAATGA ACTGGTGAGT GTTCCTAGGT
AATCATTTAT GGGTGGTGAG TGTTTTTGGT TCAAAATTTT ATGCTACTCT GTATTCACTC AAGTCTAAAT TTTATTTTTT
TTGGTATTTT TCTTTTTTCA TTTTATGAAT GTGAATCAGT TGAATAAGAA TAAGTTGTAA TAACTTTGTT TATTTTATTA
GGTAAGATGA ATTATCATTT AAAAATCAAA TTTTTATAGA TATTTGTTCC CTCCTTCCAT GTGCTTAAAA GCCATGTGAC
TTCAGTCACC TTTTCTGTCT TTTTTTTGCC ATAAATTTAT CTTGTATGGC TATATCATA

>Vigan.10G211100.01
ATGGCAAAGA ACGTCGGAAT TCTCGCCATT GACATCTACT TTCCTCCAGC ATGCGTTCAG CAGGAAGCAT TGGAGACTCA
CGATGGTGCC AGCAAAGGGA AGTACACCAT TGGGCTTGGC CAAGATTGCA TGTCGTTCTG TACCGAAGTG GAAGATGTCA
TCTCAATGAG TTTGACAGTG GTTACTTCTC TTCTTGAGAA GTATGGAATT GATGCTAAAC AAATTGGTCG CCTCGAAGTT
GGAAGTGAGA CTGTGATAGA CAAAAGCAAA TCCATCAAAA CATTCCTTAT GCAGATCTTT GAGAAATGCG GAAATACTGA
CATTGAGGGT GTTGATTCAA CTAATGCATG CTATGGGGGA ACTGCCGCCC TGTTTAACTG TGTCAATTGG GTGGAGAGCA
ACTCATGGGA TGGACGCTAT GGACTTGTTG TCTGCACTGA CAGTGCTGTC TATGCTGAAG GACCTGCTCG ACCTACTGGA
GGAGCTGCTG CTATTGCCAT GCTAATTGGT CCTGATGCTC CCATTTCTTT TGAAAGCAAA TATAGAGGAA GTCATATGTC
TCATGTTTAT GATTTTTACA AGCCGAATCT TGCTAGTGAA TATCCAGTTG TTGATGGAAA GCTGTCACAA ACTTGTTACC
TCATGGCTCT TGATTCTTGC TACAAGAGTT TCTGTCACAA GTATGAGAAA TTCGAGGGAA AACAATTTTC TCTTTCTGAT
GCGGCATACT TTGTTTTTCA CTCACCTTAC AACAAGCTAG TACAGAAGAG TTTTGCACGG CTGTATTTCA ATGACTTTTT
GAGGAATGCC AGCTCTGTGG ATGAGAATGC CAAAGAAAAG CTGGGACCTT TTTCAAATTT ATCTGGTGAT GAGAGTTACC
AAAGTCGGGA TCTTGAAAAG GCATCTCAGC AAGCTGCGAA GCCTCTGTAT GACGAGAAGG TACAGCCAAC AACCTTGATT
CCAAAGCAAG TCGGCAACAT GTACACTGCG TCACTCTATG CAGCATTTGC ATCCCTTATT CACAACAAAC ATAGCACATT
GGCTGGTAAG AGGGTGATAT TATTCTCATA CGGAAGTGGC TTAACTTCCA CAATATTTTC TTTGCAATTG CGAGATATTC
AACATCCATT TAGCTTGTCA AACATCGCTA AAGTGATGGA TGTCGATGGA AAATTGAAGT CAAGACACGA GTTTCCACCG
GAGAAGTTTG TTGAAACCCT GAAGGTAATG GAGCATAGGT ATGGTGCTAA GGAATTTGTG ACAAGCAAGG ACAGTAGCCT
TTTATCTCCG GGCACATTCT ATCTCACTGA AGTTGACTCC ATGTATCGGA GATTTTATTC AGAGAAAACT AAAGAAAGCC
TTTCTACTCC CGCTGTGAAC GGTGTGATTG CTAATGGTGT GATCGCTAAT GGCCACTAA

>Vigan.10G211100.01
MAKNVGILAI DIYFPPACVQ QEALETHDGA SKGKYTIGLG QDCMSFCTEV EDVISMSLTV VTSLLEKYGI DAKQIGRLEV
GSETVIDKSK SIKTFLMQIF EKCGNTDIEG VDSTNACYGG TAALFNCVNW VESNSWDGRY GLVVCTDSAV YAEGPARPTG
GAAAIAMLIG PDAPISFESK YRGSHMSHVY DFYKPNLASE YPVVDGKLSQ TCYLMALDSC YKSFCHKYEK FEGKQFSLSD
AAYFVFHSPY NKLVQKSFAR LYFNDFLRNA SSVDENAKEK LGPFSNLSGD ESYQSRDLEK ASQQAAKPLY DEKVQPTTLI
PKQVGNMYTA SLYAAFASLI HNKHSTLAGK RVILFSYGSG LTSTIFSLQL RDIQHPFSLS NIAKVMDVDG KLKSRHEFPP
EKFVETLKVM EHRYGAKEFV TSKDSSLLSP GTFYLTEVDS MYRRFYSEKT KESLSTPAVN GVIANGVIAN GH*