VIGGS:GBrowse

Vigan.10G211700.01

Basic Information:

Name:	Vigan.10G211700.01 Multiple alignment Variant Information
Position:	Chr10:26186627..26188925 (- strand)
Length:	2299

Functional Information:

Description:	Similar to Transcription factor bHLH14. [XP_007044561.1, Theobroma cacao]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:780.63,479.59,34.30,43.05,55.40,73.83,36.19,48.78
Arabidopsis thaliana homolog:	AT1G79390.1

Automatic updates:

Name:	NM_001251470 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305897 (LOC100305897), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:26186627..26186833 (- strand)
Length:	207
Type:	three_prime_UTR

Position:	Chr10:26186834..26187019 (- strand)
Length:	186
Type:	CDS

Position:	Chr10:26188662..26188838 (- strand)
Length:	177
Type:	CDS

Position:	Chr10:26188839..26188925 (- strand)
Length:	87
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G211700.01
AATAAATTCA AATAAAAGTA CAACAATTTT GTGTTTTGCA TAGAAAGGTC TGGAGAAGGG GGAAGGGCGG CGAGAGGAAA
GGGCGAGATG GCGTGGAAAT GGATTGTGAG GAGGACCCCC GAATCCAAAT CCTTCTTCCT TGCATTCGCC ACCATATGCG
GCGTCGTTCC GGGCGTCATA GGCTATGGCG TCATGCAACT CACTAACACG CGCAACGAGC AGCTCGAGAC CCATCTTCGC
AGAAGTGCTC GTCCCGAATC ATTGATGATG GGGCAAGTGA ATAAAGAGAG ACTGGCAGAG TACCTCGGAG AACTACAGCG
GAAGGAGGAT ACTAATGACC GATATACTGC TGCTCTAAGA GGAGAGACTT TAACGAGGAA ACCTTATGTC AGAATACAAC
CAATTCCAGA GCAAACAGAC ACCAAGGTTG ACAAGGAACA GAAGAAATGA ATAAGTTGCA GGTCTACACT ATTGTGAATA
TAGATTTTTA TAATTCACTA CGAACTTGAT ACTGCTTTGT CTGCGTTTAA TCGTGTTTTG TTACTGAATG TGTTTGCATA
AGCACTGAAC TCCTTTTCAA GTGGGTTTGG TTAGGCGGAC AAGAGTGACT AGCCATACTT TATATTATTC GATTTAGACA
AATTTTTCAG AGGAGAT

[show][hide][copy]CDS

>Vigan.10G211700.01
ATGGCGTGGA AATGGATTGT GAGGAGGACC CCCGAATCCA AATCCTTCTT CCTTGCATTC GCCACCATAT GCGGCGTCGT
TCCGGGCGTC ATAGGCTATG GCGTCATGCA ACTCACTAAC ACGCGCAACG AGCAGCTCGA GACCCATCTT CGCAGAAGTG
CTCGTCCCGA ATCATTGATG ATGGGGCAAG TGAATAAAGA GAGACTGGCA GAGTACCTCG GAGAACTACA GCGGAAGGAG
GATACTAATG ACCGATATAC TGCTGCTCTA AGAGGAGAGA CTTTAACGAG GAAACCTTAT GTCAGAATAC AACCAATTCC
AGAGCAAACA GACACCAAGG TTGACAAGGA ACAGAAGAAA TGA

[show][hide][copy]PROTEIN

>Vigan.10G211700.01
MAWKWIVRRT PESKSFFLAF ATICGVVPGV IGYGVMQLTN TRNEQLETHL RRSARPESLM MGQVNKERLA EYLGELQRKE
DTNDRYTAAL RGETLTRKPY VRIQPIPEQT DTKVDKEQKK *