GBrowse Details

Vigan.10G213700.01

Basic Information:
Name: Vigan.10G213700.01
Multiple alignment
Variant Information
Position: Chr10:26300145..26304260 (+ strand)
Length: 4116
Functional Information:
Description: Similar to Uncharacterized protein. [I1JA52, Glycine max]
GO: Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367)
Cellular Component: transcription factor TFIIE complex (GO:0005673)
InterPro: Transcription factor TFIIE beta subunit, DNA-binding domain (IPR003166)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:35.90,10.35,15.22,11.11,16.26,8.86,12.46,14.80
Automatic updates:
Name: NM_001253940 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription initiation factor IIE subunit beta-like (LOC100788089), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26300145..26300499 (+ strand)
Length: 355
Type: five_prime_UTR
Position: Chr10:26300500..26300688 (+ strand)
Length: 189
Type: CDS
Position: Chr10:26301675..26301806 (+ strand)
Length: 132
Type: CDS
Position: Chr10:26301904..26302020 (+ strand)
Length: 117
Type: CDS
Position: Chr10:26303623..26303958 (+ strand)
Length: 336
Type: CDS
Position: Chr10:26303959..26304260 (+ strand)
Length: 302
Type: three_prime_UTR


>Vigan.10G213700.01
CACGCGTTGA ATTGCGGAGA AATATTATAA GAGACCTTCC TTCCTATGTC CGCGTGATTC AGATTGTGCA GGAGAAAAAC
CTGTGAAGGC AATCCCCTTT GCCACACAAT CCAATTTCCT GCGATCATAC ACCTTTCAAT CTTCTCGTAA TCTACCTTTT
TCAAAATCCA CTTACCACCT GTTTGATTCC CTTTCCAATT TGGATCCACG AATAATAAGA TATATTGATT AAGCCTTTTC
CCCAAATAAT AGACATAGAA GAGTAGATAA TCAAAAGTAC CAGCGCGGAG TTGATCGATT TGCAAATCTG AGAGTAAAAC
CTTGTGCTGC GATTACTATC AGTTTTTTAC GTCAGATGGC GTTTCAGGAA AAGGGAAACA GGTTTAAAAG GCAGCCAGAG
AAGAATTCTT CGGCTTCAAA CAATGGAAGA ACTCCAGGTG CTGTCAAGTT CTCTAACGAC ACGGAAAGAC TTCAACATGT
TAATAGCATC CGCAAAGCAC CAGTAGGGGC TCAGATGAAG CGTGTTATTG ATCTCCTTTT TGAGACCCGA AAGGCTTTAA
CGATGGAGCA AATAAATGAA GCGTGTTATG TGGACATGAG AGCTAATAAA GATGTTTTTG AGAGTATGAG GAAAAACCCA
AAAATAAAAT ATGATGGGGA AAGATTCTCT TACAAGTCCA AGCATGATAT TAGGGACAAA AGTCAGCTGC TTGTCCTGGT
GCGTAAGTTT CCAGAGGGTA TTGCTGTTGT TGACCTAAAA GATTCTTACC CAACTGTGAT GGAAGACTTG CAGGCTTTGA
AAGCTTCAAG GGAGGTTTGG CTGTTATCCA ACTTTGACTC ACAAGAGGAC ATTGCCTACC CGAATGATCC TAAAGTGCCC
ATTAAGGTGG ATGATGACCT AAAACAGCTT TTTCGGGAGA TTGAATTGCC TCGTGATATG ATTGACATAG AGAGGGATCT
ACAAAAGAAC GGAATGAAGC CTGCTACTAA CACTGCAAAG AGGAGGAGTG CAGCGCAAAT GGAAGGCATT TCAACAAAGC
CTAAACCTAA GAAGAAGAAG AATGAAATCA CTAAGAGGAC CAAGCTGACT AATGCCCATC TTCCGGAGCT TTTTCAGAAT
TTAAAATGAT TCCTGACTTA AGAACAAGTG GTGAATGAAT TCATATAGCT CATCTGTTGA CATACAACAT GTGGTTAAAA
ATTCTTTAAG TCGTTCAGAT GGGTATTGGC TTGTTTTATT GTATTAGCAA ACTGCTTCTG GTTTTGGATG TACCTCATCA
GTTGGAGAGA AACGATGGCC ATAGCAAATA CACAAGGCAT TCTTTTTATC TACACTTATA CACCATTCTA AGGCTGAATG
GTAATGATCA TTTGACTCAG TGAAAAATAT TCGTAAAAGG TTCTCAGTGG TATTTTCTAC CGTTGTTAAC T

>Vigan.10G213700.01
ATGGCGTTTC AGGAAAAGGG AAACAGGTTT AAAAGGCAGC CAGAGAAGAA TTCTTCGGCT TCAAACAATG GAAGAACTCC
AGGTGCTGTC AAGTTCTCTA ACGACACGGA AAGACTTCAA CATGTTAATA GCATCCGCAA AGCACCAGTA GGGGCTCAGA
TGAAGCGTGT TATTGATCTC CTTTTTGAGA CCCGAAAGGC TTTAACGATG GAGCAAATAA ATGAAGCGTG TTATGTGGAC
ATGAGAGCTA ATAAAGATGT TTTTGAGAGT ATGAGGAAAA ACCCAAAAAT AAAATATGAT GGGGAAAGAT TCTCTTACAA
GTCCAAGCAT GATATTAGGG ACAAAAGTCA GCTGCTTGTC CTGGTGCGTA AGTTTCCAGA GGGTATTGCT GTTGTTGACC
TAAAAGATTC TTACCCAACT GTGATGGAAG ACTTGCAGGC TTTGAAAGCT TCAAGGGAGG TTTGGCTGTT ATCCAACTTT
GACTCACAAG AGGACATTGC CTACCCGAAT GATCCTAAAG TGCCCATTAA GGTGGATGAT GACCTAAAAC AGCTTTTTCG
GGAGATTGAA TTGCCTCGTG ATATGATTGA CATAGAGAGG GATCTACAAA AGAACGGAAT GAAGCCTGCT ACTAACACTG
CAAAGAGGAG GAGTGCAGCG CAAATGGAAG GCATTTCAAC AAAGCCTAAA CCTAAGAAGA AGAAGAATGA AATCACTAAG
AGGACCAAGC TGACTAATGC CCATCTTCCG GAGCTTTTTC AGAATTTAAA ATGA

>Vigan.10G213700.01
MAFQEKGNRF KRQPEKNSSA SNNGRTPGAV KFSNDTERLQ HVNSIRKAPV GAQMKRVIDL LFETRKALTM EQINEACYVD
MRANKDVFES MRKNPKIKYD GERFSYKSKH DIRDKSQLLV LVRKFPEGIA VVDLKDSYPT VMEDLQALKA SREVWLLSNF
DSQEDIAYPN DPKVPIKVDD DLKQLFREIE LPRDMIDIER DLQKNGMKPA TNTAKRRSAA QMEGISTKPK PKKKKNEITK
RTKLTNAHLP ELFQNLK*