GBrowse Details

Vigan.10G215100.01

Basic Information:
Name: Vigan.10G215100.01
Multiple alignment
Variant Information
Position: Chr10:26406541..26408311 (+ strand)
Length: 1771
Functional Information:
Description: Similar to Glutathione peroxidase. [C6SZX7, Glycine max]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: glutathione peroxidase activity (GO:0004602)
InterPro: Glutathione peroxidase (IPR000889)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.62,0.03,3.39,34.88,0.18,7.55,0.14,6.13
Arabidopsis thaliana homolog: AT4G11600.1
Automatic updates:
Name: NM_001249005 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative glutathione peroxidase (LOC100500036), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249966 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306570 (LOC100306570), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26406541..26406798 (+ strand)
Length: 258
Type: five_prime_UTR
Position: Chr10:26406799..26406849 (+ strand)
Length: 51
Type: CDS
Position: Chr10:26406958..26407034 (+ strand)
Length: 77
Type: CDS
Position: Chr10:26407255..26407316 (+ strand)
Length: 62
Type: CDS
Position: Chr10:26407533..26407651 (+ strand)
Length: 119
Type: CDS
Position: Chr10:26407861..26408031 (+ strand)
Length: 171
Type: CDS
Position: Chr10:26408108..26408137 (+ strand)
Length: 30
Type: CDS
Position: Chr10:26408138..26408311 (+ strand)
Length: 174
Type: three_prime_UTR


>Vigan.10G215100.01
ATTTTCTTAA TTCAGTATAT ATGCCAAACA ATCGGTATTT TATTCTCTTT TAATTCATTT TACAACATTT TTTTTTTTTG
CATTTTCTAT TATATAGCAT ATCACATTCA GAATGCTACA GAAGTGGCTC TATCTGGTTG TTGCGTCCAA TAATTTGCTT
TTTTCTCTAC CTCTCAAGTC ATTCATTCGA CAGTCTTCCA TCCTTCTTAT CTTTCATCAG GAAAAATTCT TTCAATTTCA
AATTCCTTCA CTCTAAAAAT GGCTAGCCAA TCAAACACTA AATCATCAGT TCATGATTTC ACAGTTAAAG ATGCCAGGGG
AAATGATGTT AATCTGGGAG ATTACAAAGG AAAAGTTCTT CTCATTGTCA ATGTTGCCTC ACAATGTGGC TTGACTAATT
CAAACTACAC AGAACTGAAT CAAGTATATG ATAAATACAA AGGGAAAGGA CTTGAAATTC TGGCATTTCC TTGCAATCAG
TTTGGGGCTC AGGAACCAGG AACTAATGAA GAGATAGTGG AATTTGCTTG TACTCGCTTC AAAGCTGAGT TTTCCATTTT
TGACAAGGTG GATGTGAATG GTGACAATGC TGCTCCACTG TACAAATTTC TGAAATCAAG CAAAGGTGGA GGAGTCCTTG
GGGATAGTAT CAAATGGAAC TTCTCTAAAT TTCTTGTTGA CAAGGATGGG AATGTGGTTG ACCGTTATGC ACCAACAACT
TCTCCACTAA GCATTGAGAA AGACATAAAG AAGCTGTTGG ATGCATGATG TGGAGTTGCC ACTAAATGAA TATCATCATG
AATAAGGAAA ATGTATTGCC ATATAAGTGG AATTTCCACA GTATTTCTAC TTCTATATGT ACCTCTGAGT TGCTGTTCAT
CTTCATAAAA TTGTGACTAA CAACCATCCA ATAATTTGAT TGCTTTAATT TCATTAGTAG AA

>Vigan.10G215100.01
ATGGCTAGCC AATCAAACAC TAAATCATCA GTTCATGATT TCACAGTTAA AGATGCCAGG GGAAATGATG TTAATCTGGG
AGATTACAAA GGAAAAGTTC TTCTCATTGT CAATGTTGCC TCACAATGTG GCTTGACTAA TTCAAACTAC ACAGAACTGA
ATCAAGTATA TGATAAATAC AAAGGGAAAG GACTTGAAAT TCTGGCATTT CCTTGCAATC AGTTTGGGGC TCAGGAACCA
GGAACTAATG AAGAGATAGT GGAATTTGCT TGTACTCGCT TCAAAGCTGA GTTTTCCATT TTTGACAAGG TGGATGTGAA
TGGTGACAAT GCTGCTCCAC TGTACAAATT TCTGAAATCA AGCAAAGGTG GAGGAGTCCT TGGGGATAGT ATCAAATGGA
ACTTCTCTAA ATTTCTTGTT GACAAGGATG GGAATGTGGT TGACCGTTAT GCACCAACAA CTTCTCCACT AAGCATTGAG
AAAGACATAA AGAAGCTGTT GGATGCATGA 

>Vigan.10G215100.01
MASQSNTKSS VHDFTVKDAR GNDVNLGDYK GKVLLIVNVA SQCGLTNSNY TELNQVYDKY KGKGLEILAF PCNQFGAQEP
GTNEEIVEFA CTRFKAEFSI FDKVDVNGDN AAPLYKFLKS SKGGGVLGDS IKWNFSKFLV DKDGNVVDRY APTTSPLSIE
KDIKKLLDA*