GBrowse Details

Vigan.10G215200.01

Basic Information:
Name: Vigan.10G215200.01
Multiple alignment
Variant Information
Position: Chr10:26409027..26414564 (+ strand)
Length: 5538
Functional Information:
Description: Similar to Glutathione peroxidase. [V7CM99, Phaseolus vulgaris]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: glutathione peroxidase activity (GO:0004602)
InterPro: Glutathione peroxidase (IPR000889)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.10,2.46,45.46,21.03,50.00,224.56,79.04,29.61
Arabidopsis thaliana homolog: AT1G63460.1
Automatic updates:
Name: NM_001250703 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527034 (LOC100527034), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26409027..26409105 (+ strand)
Length: 79
Type: five_prime_UTR
Position: Chr10:26409106..26409159 (+ strand)
Length: 54
Type: CDS
Position: Chr10:26409826..26409902 (+ strand)
Length: 77
Type: CDS
Position: Chr10:26410086..26410147 (+ strand)
Length: 62
Type: CDS
Position: Chr10:26413525..26413643 (+ strand)
Length: 119
Type: CDS
Position: Chr10:26414042..26414209 (+ strand)
Length: 168
Type: CDS
Position: Chr10:26414299..26414331 (+ strand)
Length: 33
Type: CDS
Position: Chr10:26414332..26414564 (+ strand)
Length: 233
Type: three_prime_UTR


>Vigan.10G215200.01
CAAAATCGAA GAGTTGGTGT GTTGCTCTTC ATTCTAACGT GTCTCTTCAG TTCCTCTTCT TACAGTACAT ACAGACACCA
TGTCCACCGG TTCCTCCAAG GATCCAAAAT CCGTGTACGA TTTCTCTGTT AAGGATGCTA AGGGAGATGT GGTAGATCTC
TCCACTTACG AGGGAAAAGT CCTGCTGATT ATCAATGTTG CTTCTAAATG CGGCTTGACC AACTCCAACT ATACGGAGCT
GAATGAATTA TATGCGAAGT ATAAAGACGA AGGCTTGGAG ATTCTGGCAT TTCCATGTAA CCAATTTGGA GAACAAGAAC
CAGAAAGCAA TGATAAAATT GTGGACTTTG TCTGCACTCG TTTCAAATCT GAATTCCCCA TCTTTGATAA GATTGAAGTG
AATGGGGGTA ATTCAGCTCC TCTGTATAAA TTCTTGAAGT CCGGCAAATG GGGTATTTTT GGTGATGATA TTCAGTGGAA
CTTTGCCAAG TTTGTGGTTG ATAAGAAGGG ACAAGTAGTG GGTCGCTATT ATCCCACGAC TTCTCCTCTC AGCCTTGAGA
GAGACATCCG TCAACTTCTG GGTATTTCGT GAAGGCAACT GGGAAGAGAG GATATGGCGA ATGTGTTGTC TTCCTCAGTT
TCTTAACAGC TTTGTCTCGA GGCAATGTTA TGCAATAAGC ACCTTGTCAT ACAATGGCTT CCTCCTTTAC TTTCTTGTTT
CCTTTTTAAC TTCATTTCTA TCATAAACCA TACTTCTCTT CAGTTTTTTT AACCCTCGGT CTTCCTTAGT TATAAATGTT
TCACCTATGG AAGTTTCAAT TTTTG

>Vigan.10G215200.01
ATGTCCACCG GTTCCTCCAA GGATCCAAAA TCCGTGTACG ATTTCTCTGT TAAGGATGCT AAGGGAGATG TGGTAGATCT
CTCCACTTAC GAGGGAAAAG TCCTGCTGAT TATCAATGTT GCTTCTAAAT GCGGCTTGAC CAACTCCAAC TATACGGAGC
TGAATGAATT ATATGCGAAG TATAAAGACG AAGGCTTGGA GATTCTGGCA TTTCCATGTA ACCAATTTGG AGAACAAGAA
CCAGAAAGCA ATGATAAAAT TGTGGACTTT GTCTGCACTC GTTTCAAATC TGAATTCCCC ATCTTTGATA AGATTGAAGT
GAATGGGGGT AATTCAGCTC CTCTGTATAA ATTCTTGAAG TCCGGCAAAT GGGGTATTTT TGGTGATGAT ATTCAGTGGA
ACTTTGCCAA GTTTGTGGTT GATAAGAAGG GACAAGTAGT GGGTCGCTAT TATCCCACGA CTTCTCCTCT CAGCCTTGAG
AGAGACATCC GTCAACTTCT GGGTATTTCG TGA

>Vigan.10G215200.01
MSTGSSKDPK SVYDFSVKDA KGDVVDLSTY EGKVLLIINV ASKCGLTNSN YTELNELYAK YKDEGLEILA FPCNQFGEQE
PESNDKIVDF VCTRFKSEFP IFDKIEVNGG NSAPLYKFLK SGKWGIFGDD IQWNFAKFVV DKKGQVVGRY YPTTSPLSLE
RDIRQLLGIS *