GBrowse Details

Vigan.10G220600.01

Basic Information:
Name: Vigan.10G220600.01
Multiple alignment
Variant Information
Position: Chr10:26791317..26795986 (+ strand)
Length: 4670
Functional Information:
Description: Similar to protein SGT1 homolog. [XP_004511553.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: CS domain (IPR007052)
SGS (IPR007699)
HSP20-like chaperone (IPR008978)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide repeat (IPR019734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:48.45,65.17,76.85,76.40,54.95,48.42,31.27,105.81
Automatic updates:
Name: NM_001249643 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SGT1-1 (LOC100194420), mRNA.
PubMed ID: 24763608 NCBI(pubmed)
19061405 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:26791317..26791436 (+ strand)
Length: 120
Type: five_prime_UTR
Position: Chr10:26791437..26791596 (+ strand)
Length: 160
Type: CDS
Position: Chr10:26791682..26791751 (+ strand)
Length: 70
Type: CDS
Position: Chr10:26791874..26791998 (+ strand)
Length: 125
Type: CDS
Position: Chr10:26792299..26792440 (+ strand)
Length: 142
Type: CDS
Position: Chr10:26792942..26793038 (+ strand)
Length: 97
Type: CDS
Position: Chr10:26793147..26793212 (+ strand)
Length: 66
Type: CDS
Position: Chr10:26794120..26794255 (+ strand)
Length: 136
Type: CDS
Position: Chr10:26794393..26794475 (+ strand)
Length: 83
Type: CDS
Position: Chr10:26795000..26795104 (+ strand)
Length: 105
Type: CDS
Position: Chr10:26795226..26795333 (+ strand)
Length: 108
Type: CDS
Position: Chr10:26795334..26795986 (+ strand)
Length: 653
Type: three_prime_UTR


>Vigan.10G220600.01
AAATACCATA GAGGGAGGGA GAAGTAAAGC AAATGAAAAG AAGGGTCTAG AAGAAAAATC CCTGCTTAGA AATAAATATT
ACTGTGGAAT CGCACGTCAA CGAGCTCACT CCAAATCGAA ATGGCGAAAG AACTTGAGAG GAAAGCGAAG GAAGCATTCT
TCGATGACGA CTTCGCTCTC GCCGTCGATT TCTACTCCGA AGCCATAAAA CTAGATCCAA AGGACGCTCA TCTCTTCGCT
GACAGAGCAC AAGCCCATAT TAAGCTCAAC GCTTTCACTG AAGCAATTTC CGATGCCAAC AACGCCATCT TATTAAACCC
TTCCTTGTCC AAGGCCTATC TTCGTAAAGG GACTGCTTGT ATAAAGCTAG AAGAATATCA CACTGCCAAG TTGGCACTTC
AAAGCGGTGC CGCTTTTGCG CCAGACGATT TAAGATTCTC CAAGTTGATT CAAGAATGTG ACCGCTTTAT TTCAGAGGAA
CCAAATGATT TTGTTAGCAC CATATCGTCA AATGGTTTCC ACTTGAACAA TACAAATGAC GGGGTGACTA AAGAAGCTGA
GGAAGACAGT TTGGTATCCC AAATCAAGGA AATCACAATA AACAGGCCAA AATACAGACA TGAATACTAC CAAAAGCCAG
AAGAAGTGGT TGTGACAATA TTTGCAAAAG GAATATCAGC AAAAGATTTG GTTGCTGACT TCGGTGAACA GATTCTTAGT
GTAACTATTG ATGTTCCTGG CCAAGATGTC TATCGTTTCC AACCTCGATT GTTTGGGAAG ATAATACCCA ACAACTGCAA
AGTTGTGGTA TTGTCAACCA AAATTGAAAT TCGTCTTGCA AAAGCTGAAG CTATTAATTG GACATCTCTG GAATATAGCA
AGGATACACT ACCCACTAAA ATAAGCATGC CTATAGTTCA ATCTCAAAGG CCTTCATATC CATCATCAAA AGCAAAGACA
AAAGATTGGG ATAAGTTGGA AGCTCTAGTG AAAAAAGAGG AGAAAGAAGA AAAGCTTGAT GGTGATGCTG GTTTGAATAA
ATTGTTCCGT GATATTTACC AAAATGCAGA TGAGGACATG AGGAGAGCAA TGAGCAAGTC TTTCGTGGAG TCAAATGGAA
CAGTGCTATC AACTGATTGG AAAGAAGTGG GATCAAAGAA GGTGGAAGGC AGTCCTCCAG ATGGCTTGGA GCTGAAAAAA
TGGGAGTATT AATCGGGTAC TAAAATATCC ATATTTGAAG CTGATGCTTG TGGGAATGTA ATCATTGTTA ATGCTGTTTT
ATTTGTGTAA GGGACGTTAT TTTTCTGTGT GAACAACTTA ATTTGCTTTT TGCTGTAGGA GTGGATTTAA TTTTCTTGGT
ATGTGTTCAT ATAATGTCGG ATTCCAAGTT TTTATTTTCT TATGAATTAA ATATTGGAAA TTAAGTTTGA CTGTGGAGAT
GATTATGAGC AGTAATCTTG TCCGAGCTTC GTCATAAGAT AAAAGTCATC ATCCTTGGTT CAGAGAAGTA GGAGGCAAAA
CGTAGTCTTT AGCTTTTGTA TATAACCTGT GCCATGTGGG AACTGAGTCT CCTCAGTTTT CCTTACCTAT CAATAACACC
ATCATAAACA TAAAGGTAAG TTTTTTGCTA GTCAAATCTG TAAAAATGGA AGATTGCATT AGGTTCCCTC AAATGATTCA
AACTGAACAT CGAATCAAAA TAATCGTATA TGAATGCAAC ACAACATTAG AATTTGGGCA GTTATTGAAT CTCATAAACC
GGAAAAAAGG TGATAATGTA CTGCATGAGT TGGATAGATC AAGAAACTAC CTGTTTGAGG ATGCCTTTTT ATTTTATAAA
TATAACTTAA TACAGAGTAC AAAAG

>Vigan.10G220600.01
ATGGCGAAAG AACTTGAGAG GAAAGCGAAG GAAGCATTCT TCGATGACGA CTTCGCTCTC GCCGTCGATT TCTACTCCGA
AGCCATAAAA CTAGATCCAA AGGACGCTCA TCTCTTCGCT GACAGAGCAC AAGCCCATAT TAAGCTCAAC GCTTTCACTG
AAGCAATTTC CGATGCCAAC AACGCCATCT TATTAAACCC TTCCTTGTCC AAGGCCTATC TTCGTAAAGG GACTGCTTGT
ATAAAGCTAG AAGAATATCA CACTGCCAAG TTGGCACTTC AAAGCGGTGC CGCTTTTGCG CCAGACGATT TAAGATTCTC
CAAGTTGATT CAAGAATGTG ACCGCTTTAT TTCAGAGGAA CCAAATGATT TTGTTAGCAC CATATCGTCA AATGGTTTCC
ACTTGAACAA TACAAATGAC GGGGTGACTA AAGAAGCTGA GGAAGACAGT TTGGTATCCC AAATCAAGGA AATCACAATA
AACAGGCCAA AATACAGACA TGAATACTAC CAAAAGCCAG AAGAAGTGGT TGTGACAATA TTTGCAAAAG GAATATCAGC
AAAAGATTTG GTTGCTGACT TCGGTGAACA GATTCTTAGT GTAACTATTG ATGTTCCTGG CCAAGATGTC TATCGTTTCC
AACCTCGATT GTTTGGGAAG ATAATACCCA ACAACTGCAA AGTTGTGGTA TTGTCAACCA AAATTGAAAT TCGTCTTGCA
AAAGCTGAAG CTATTAATTG GACATCTCTG GAATATAGCA AGGATACACT ACCCACTAAA ATAAGCATGC CTATAGTTCA
ATCTCAAAGG CCTTCATATC CATCATCAAA AGCAAAGACA AAAGATTGGG ATAAGTTGGA AGCTCTAGTG AAAAAAGAGG
AGAAAGAAGA AAAGCTTGAT GGTGATGCTG GTTTGAATAA ATTGTTCCGT GATATTTACC AAAATGCAGA TGAGGACATG
AGGAGAGCAA TGAGCAAGTC TTTCGTGGAG TCAAATGGAA CAGTGCTATC AACTGATTGG AAAGAAGTGG GATCAAAGAA
GGTGGAAGGC AGTCCTCCAG ATGGCTTGGA GCTGAAAAAA TGGGAGTATT AA

>Vigan.10G220600.01
MAKELERKAK EAFFDDDFAL AVDFYSEAIK LDPKDAHLFA DRAQAHIKLN AFTEAISDAN NAILLNPSLS KAYLRKGTAC
IKLEEYHTAK LALQSGAAFA PDDLRFSKLI QECDRFISEE PNDFVSTISS NGFHLNNTND GVTKEAEEDS LVSQIKEITI
NRPKYRHEYY QKPEEVVVTI FAKGISAKDL VADFGEQILS VTIDVPGQDV YRFQPRLFGK IIPNNCKVVV LSTKIEIRLA
KAEAINWTSL EYSKDTLPTK ISMPIVQSQR PSYPSSKAKT KDWDKLEALV KKEEKEEKLD GDAGLNKLFR DIYQNADEDM
RRAMSKSFVE SNGTVLSTDW KEVGSKKVEG SPPDGLELKK WEY*