GBrowse Details

Vigan.10G222400.01

Basic Information:
Name: Vigan.10G222400.01
Multiple alignment
Variant Information
Position: Chr10:26919891..26921736 (+ strand)
Length: 1846
Functional Information:
Description: Similar to Uncharacterized protein. [A9PA49, Populus trichocarpa]
InterPro: Glyoxalase-like domain (IPR025870)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.08,9.30,2.94,2.12,7.88,13.73,3.84,2.13
Arabidopsis thaliana homolog: AT1G64185.1
Automatic updates:
Name: NM_001248552 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max VOC domain-containing protein (LOC100500516), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26919891..26920088 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Chr10:26920089..26920249 (+ strand)
Length: 161
Type: CDS
Position: Chr10:26920539..26920674 (+ strand)
Length: 136
Type: CDS
Position: Chr10:26920749..26920805 (+ strand)
Length: 57
Type: CDS
Position: Chr10:26920806..26921736 (+ strand)
Length: 931
Type: three_prime_UTR


>Vigan.10G222400.01
GAATAACGTA AAATAGAAGC TAATTATGTA ATTAGATCGC AAATATGGAG GGGTTTTAGG TGAACCGAAG AGGTTCCGTT
CTGGTGATAT CCGTGAATAA AAAGAAATAG ATGGGCCAAA TTTGGCAGGC CCGAAACTTG AAATCCAATT GAGCGCACGT
GTGTCTGCGA GAAGAGCGAA ACGCAGACGG CGTCCCTGAT GGCAGCGTCG TTCAGGTGGA TATTACAACT ACACAGGGAT
GTTCCAAAAG CCGCACGCTT CTACTCCGAA GGCTTGGACT TCACCATCAA CGTCTGCTCT CTCCGGTGGG CCGAACTTCA
ATCCGGTTCT CTCAAGCTTG CCCTCATGCA TTCTTCCCAT GATCAAGCCA CCGCGCAGAA AGAGTACTCC TCCCTTTTGT
CATTTACGGT GACTGACATG AACAATACAG TAAGTAAATT AATGGCGTTA GGAGCTGAAC TCGATGGGCC CATCAAATAT
GAGATCCATG GAAAGGTTGC AGCTATGCGG TGTATTGATG GACATGTCTT AGGCCTGTAT GAACCTCTCT AAGATGCATA
GCAGATTTAG TATCAATAAT ACCCTCTCTT GTCATGGTAA CATTTTTTAG CCCGTCGTGA TCTTGGAAAA GATAGGGTAA
ATATGTGATA CCTTTTGTTT TATGGATTCC CTGCAATAAT TGATAATGTT ATCTTGTCGA GCTCAATAGC AACAGCAGGA
TATGGCGTGT GAAGCAACAG ACCTGAGAAT AAGGTAAAAT GATTAGAAGA TTGAAAAGAA GCTATTCAAA TGCCTCCAAA
TTATCTGTCT TTTAGAATGG GTTTTTTGGC ACCATCCATA TATAATTGAC AGCAAATCAC CTCTTGATTT CTTTTTTTCT
CTTTAAGGAA GACAGCTTCT CTTTCCTCCC TGTTGAATTT TGGTTGAGTT ATAATATCTT GTCTTCTACT TCTATCCGAG
GATTGATTTT TTTTTTTTTG GTGAAACATT TAAACTTTAA AGCTTTCAAT TATACCACTA ATTGTAGCCT TCGACCATGC
AATCATTCAA TCATCCATGG AATATTTTTT TGCCCAAATC CTAATTGGAT TAATGCATTT TTCTATTTCT CGTGCATACA
TGATATGGCG TCAGATAAAA TTCTATACAA TCACTTGAAA ATATTATCCA TGTGTAGTAT TTTAATGTGA TACATGAAGG
TGCTGTGTGC TCTTACTTGA AACATGATGT TTTGTATCAC TTGAAAAGAT TCATATGTAG CACGGCCAAG GGAGAGAGCA
ATAAATTTAT TCAACTGTTG CACTTTCTTC CTTAAGCAAA AACTTAAGAT CACCAAGACA GAAAAACAAA CAACTTTACG
GGCACTAAAG AACTTACATT TGTTATAGAG CTGTTAAAGT AGTTATCCGG TCCACTCTGG GTTAGCCATT TTGTATGTTC
ACTCGACCTA CACTAAATTT CAAATTCGTG AAATAATCAT GAC

>Vigan.10G222400.01
ATGGCAGCGT CGTTCAGGTG GATATTACAA CTACACAGGG ATGTTCCAAA AGCCGCACGC TTCTACTCCG AAGGCTTGGA
CTTCACCATC AACGTCTGCT CTCTCCGGTG GGCCGAACTT CAATCCGGTT CTCTCAAGCT TGCCCTCATG CATTCTTCCC
ATGATCAAGC CACCGCGCAG AAAGAGTACT CCTCCCTTTT GTCATTTACG GTGACTGACA TGAACAATAC AGTAAGTAAA
TTAATGGCGT TAGGAGCTGA ACTCGATGGG CCCATCAAAT ATGAGATCCA TGGAAAGGTT GCAGCTATGC GGTGTATTGA
TGGACATGTC TTAGGCCTGT ATGAACCTCT CTAA

>Vigan.10G222400.01
MAASFRWILQ LHRDVPKAAR FYSEGLDFTI NVCSLRWAEL QSGSLKLALM HSSHDQATAQ KEYSSLLSFT VTDMNNTVSK
LMALGAELDG PIKYEIHGKV AAMRCIDGHV LGLYEPL*