VIGGS:GBrowse

Vigan.10G224200.01

Basic Information:

Name:	Vigan.10G224200.01 Multiple alignment Variant Information
Position:	Chr10:27020331..27023218 (- strand)
Length:	2888

Functional Information:

Description:	Similar to Uncharacterized protein. [K7LMK8, Glycine max]
GO:	Molecular Function: DNA binding (GO:0003677)
InterPro:	Homeodomain-like (IPR009057)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.82,2.85,0.64,8.02,1.02,0.00,15.26,1.42
Arabidopsis thaliana homolog:	AT5G53200.1

Automatic updates:

Name:	NM_001253924 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max transcription factor CPC-like (LOC100814431), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:27020331..27020780 (- strand)
Length:	450
Type:	three_prime_UTR

Position:	Chr10:27020781..27020904 (- strand)
Length:	124
Type:	CDS

Position:	Chr10:27022831..27022918 (- strand)
Length:	88
Type:	CDS

Position:	Chr10:27023007..27023037 (- strand)
Length:	31
Type:	CDS

Position:	Chr10:27023038..27023218 (- strand)
Length:	181
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G224200.01
AAAATATTTT TATAATTATT ATATAGATGC AGCGTACAAT TGTATGGTAC CTATAAGTTC TCTCATATTC GACCAGTTTA
AGAACAAAAT TATTCAATTC CTCTGAGCAT TAGTCTCTGC GTTCTTCTTC CTCTCTCCGT GTTCGTGTTC GTGTCAGCGG
TAACAAGGTG AGAAGGCGAA GATGTCAACC ACCGCAACTA CAACATCAGA AGAAGTTAGC AGCAACGAGT GGGAAGTGAT
ACACATGAGC GAGCAAGAAG AGGATCTGAT TCATAGGATG TACAAGCTGG TCGGAGACAA GTGGAATTTG ATAGCGGGTC
GCATTCCGGG TCGTAAAGCA GAAGAGATAG AGAGATTCTG GATTATGAGA CACACTCACA CTTTCTCTGT TACAAAAAAT
CAAAGTAAAG CCAAAGACTC TTGATTTTTT CTTTTCTATC TTTCTGGGCA TAATTCTCAT AAATATATAA ATTTCGGTTA
AATATATGTT TTACACGTCT ATAGATTTCA GATAATATTT TCTGTATTTT TAGACTTTTA TTTATTTTTT GTTATCAATA
TCAGTTTCTA AGGGTTACAA TATTTTTTGT TTATTTTTTT TATCTCTTTC AAGGACTGAT ATTGATGATG AAAAACCTAA
TAAAAGACTA AAAATATAAT CAAAGTCCAA GGACTATCAA ATAAAATAAA AATCTGAAGT TTGATAAGAT CTTAAAAATA
TATTTAACCG AATAAATTTT GTTCTGAAAT TTTTGTGTCG CCCATTGTAT TCCTTCTGCT TGAATCGTAA ACTTCCGTCA
GTGTCATAGA AGCTACGAAA AAGTTTGCAT TTTAGTTTGT ATAAAAAAAA GGTGTGTATT AGACTACTTT AATT

[show][hide][copy]CDS

>Vigan.10G224200.01
ATGTCAACCA CCGCAACTAC AACATCAGAA GAAGTTAGCA GCAACGAGTG GGAAGTGATA CACATGAGCG AGCAAGAAGA
GGATCTGATT CATAGGATGT ACAAGCTGGT CGGAGACAAG TGGAATTTGA TAGCGGGTCG CATTCCGGGT CGTAAAGCAG
AAGAGATAGA GAGATTCTGG ATTATGAGAC ACACTCACAC TTTCTCTGTT ACAAAAAATC AAAGTAAAGC CAAAGACTCT
TGA

[show][hide][copy]PROTEIN

>Vigan.10G224200.01
MSTTATTTSE EVSSNEWEVI HMSEQEEDLI HRMYKLVGDK WNLIAGRIPG RKAEEIERFW IMRHTHTFSV TKNQSKAKDS
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