GBrowse Details

Vigan.10G224200.01

Basic Information:
Name: Vigan.10G224200.01
Multiple alignment
Variant Information
Position: Chr10:27020331..27023218 (- strand)
Length: 2888
Functional Information:
Description: Similar to Uncharacterized protein. [K7LMK8, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
InterPro: Homeodomain-like (IPR009057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.82,2.85,0.64,8.02,1.02,0.00,15.26,1.42
Arabidopsis thaliana homolog: AT5G53200.1
Automatic updates:
Name: NM_001253924 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor CPC-like (LOC100814431), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:27020331..27020780 (- strand)
Length: 450
Type: three_prime_UTR
Position: Chr10:27020781..27020904 (- strand)
Length: 124
Type: CDS
Position: Chr10:27022831..27022918 (- strand)
Length: 88
Type: CDS
Position: Chr10:27023007..27023037 (- strand)
Length: 31
Type: CDS
Position: Chr10:27023038..27023218 (- strand)
Length: 181
Type: five_prime_UTR

>Vigan.10G224200.01 class=Sequence position=Chr10:27020331..27023218 (- strand)
AAAATATTTT TATAATTATT ATATAGATGC AGCGTACAAT TGTATGGTAC CTATAAGTTC TCTCATATTC GACCAGTTTA
AGAACAAAAT TATTCAATTC CTCTGAGCAT TAGTCTCTGC GTTCTTCTTC CTCTCTCCGT GTTCGTGTTC GTGTCAGCGG
TAACAAGGTG AGAAGGCGAA GATGTCAACC ACCGCAACTA CAACATCAGA AGGTTCTTTT CTTCATGAAT TAATTTATGC
TGTAAATAAT TAGTGTTTGC GTTTCGTTCG GAAATTCTGA TAAAGGTTAA TACGATGCAG AAGTTAGCAG CAACGAGTGG
GAAGTGATAC ACATGAGCGA GCAAGAAGAG GATCTGATTC ATAGGATGTA CAAGCTGGTC GGAGACAAGT AAGCTTCCAT
GTTTTATGTT GTAGTGCATT TTTCTTTCTT AAACAATCAG AAAACTCCAT TGCACTTTAA CGAGGATTTG GGTTTCTGCG
TTAATTCTGT GCATCTGAAG TTTCCAGAAC TTTGTAGTTT AACCAGGATT CGGATTGTGG CATGCACCTA GATAGAATTT
TAACCGTAGA TGATTATATA AGTTGACTTA AAGGTCAGAG GAATGAATGG TTATAAAAAT AGAATGTTCA TCCATTATGT
TTGGCCATTC ATGGCAGACA TTGACTATTC GGTAGTAATG AGTTATTTGG CTAAAGGCAT CATCATTGCT TACATACCAA
TAATTAATTA CAAAACAGAT TATTAACTCT TCTCTTTAAG ATTGGTTTGG TTTTTAAAAT GGGAAAAGGT AGATAATCGT
GATTATTTTT TATTAGTAAG GATAAGGTAA TATAAATTTA TATTTATTTA ACACGTTACA AGGTGAAATA ATTATAATAG
AGTAAATTTT GTATTTTCTT TAAAAAAAAT AAAACAATAG TGTGAAATAT ATATATATAT TTATATTAAA ATATCATTTT
TTACTTTTAT TTTTTTGGTT AAAGGAGATA CAGAGATTAT ATTGGTCTTT TCATTTTTTC ATTTTTACTT TTTATCAAAT
TAGTTTGATT GTACAGTTTT TAAAATATTT TCTTTTCGTC TCTTTACTTG TTTCTAGTCT ATCATATAGT TAAATTTTCA
ATTTTATTTT TCTACTATTT ATTTCTGTTG TGATATAATC TTTTTAACTT CTTTTCTATG AACAAGAATA CAATAAAAAG
TTCAGACGTA AATTATTCAG TATACAGTAC GGACTCGTGG ATGTTTTTTC ACACTTGACG ATGAAATTAA CGTGTTGGAG
AGAGAAATAT TAGTTTTAAG AAACAATGAG AATTATTATA TTATTTTAAA ATATTTTTTA TCTTTATTTT CTTTATTTCC
TTGATCAGAC AAGTTTAATT TTTATTTTAT CAGTTCGTCT CTGTAGTTTT CTTTATCTCT ACCCTTCAAG ATGTTAATAA
TGAAAGTGGA AAGAAAGAAA AATTAACATA AAAGTGAGAC AATTTTTAAA TTGTGTGGTA AGGAAAAACA GAGAAAAGAG
ATATTTTTTA TATTGTAAAT AGAATAACAA ATATCGTGAA TAAATAAATA TTAGATAATT AAGTTATTTT ACATTTTATA
TTCATGATTC TGTGTTTTCT TAAATAAAAT AAAACACTTT TAAGCACGAT ACCGACCATA TTGTTTCCCC TTCTTCCTTG
TCTTTTTTTT AATCCTTTTC GTTGAAAATT ACCTTTGAAA CAAGTCATGT TTGTTAATCT TGTTTTATTA TTTCAAAATC
ACTTTTAAAA ATAGATATAT ACAATGAGTT AAGTACTTAA ATTTGTATTC TTTGTAGCTT TTGTTATTTG TTATATCCTA
GGGTGTTTTT TTGTCTTATT TCTTTAAGTT TTTTTAATCT TCCATGTTAT TTATTTGTAC CTTTTTATCT CATTGAAAAT
ACTGCAAAAA AAACTAGTGA ATTTCATAAA TTTTAAATAT TGGCAAAATT AAGTTAGATT TATCAGAAAC ATAAATTTTT
TCTCGAATAA TTTATTAATA TTTAGACAGA TGCTATCCTC TTGTAGGTTC TTCATCCACA CATTTTCCGG TTGAACACGA
GCCTTTTAAA ATGCATAATC TTTGCACTTT TTTTTTATTA ATTTTATCAT GTTTCATAAT AAAGAATTTA AATGGGTAAT
AGTCATGGGC CATTATTAAT GTCAAACAAT TCGTTTGAAC ATTATCTGAT TGTCTTTGAT TAAATATTTA TAAGTTACAT
ACTTTTCCTT TTAAGTGAAA ATATTGAAAA TATTGAAAAT ACATGAATGT TAATTTGAAT TTGCAATTGA ATAGGTGGAA
TTTGATAGCG GGTCGCATTC CGGGTCGTAA AGCAGAAGAG ATAGAGAGAT TCTGGATTAT GAGACACACT CACACTTTCT
CTGTTACAAA AAATCAAAGT AAAGCCAAAG ACTCTTGATT TTTTCTTTTC TATCTTTCTG GGCATAATTC TCATAAATAT
ATAAATTTCG GTTAAATATA TGTTTTACAC GTCTATAGAT TTCAGATAAT ATTTTCTGTA TTTTTAGACT TTTATTTATT
TTTTGTTATC AATATCAGTT TCTAAGGGTT ACAATATTTT TTGTTTATTT TTTTTATCTC TTTCAAGGAC TGATATTGAT
GATGAAAAAC CTAATAAAAG ACTAAAAATA TAATCAAAGT CCAAGGACTA TCAAATAAAA TAAAAATCTG AAGTTTGATA
AGATCTTAAA AATATATTTA ACCGAATAAA TTTTGTTCTG AAATTTTTGT GTCGCCCATT GTATTCCTTC TGCTTGAATC
GTAAACTTCC GTCAGTGTCA TAGAAGCTAC GAAAAAGTTT GCATTTTAGT TTGTATAAAA AAAAGGTGTG TATTAGACTA
CTTTAATT

>Vigan.10G224200.01
AAAATATTTT TATAATTATT ATATAGATGC AGCGTACAAT TGTATGGTAC CTATAAGTTC TCTCATATTC GACCAGTTTA
AGAACAAAAT TATTCAATTC CTCTGAGCAT TAGTCTCTGC GTTCTTCTTC CTCTCTCCGT GTTCGTGTTC GTGTCAGCGG
TAACAAGGTG AGAAGGCGAA GATGTCAACC ACCGCAACTA CAACATCAGA AGAAGTTAGC AGCAACGAGT GGGAAGTGAT
ACACATGAGC GAGCAAGAAG AGGATCTGAT TCATAGGATG TACAAGCTGG TCGGAGACAA GTGGAATTTG ATAGCGGGTC
GCATTCCGGG TCGTAAAGCA GAAGAGATAG AGAGATTCTG GATTATGAGA CACACTCACA CTTTCTCTGT TACAAAAAAT
CAAAGTAAAG CCAAAGACTC TTGATTTTTT CTTTTCTATC TTTCTGGGCA TAATTCTCAT AAATATATAA ATTTCGGTTA
AATATATGTT TTACACGTCT ATAGATTTCA GATAATATTT TCTGTATTTT TAGACTTTTA TTTATTTTTT GTTATCAATA
TCAGTTTCTA AGGGTTACAA TATTTTTTGT TTATTTTTTT TATCTCTTTC AAGGACTGAT ATTGATGATG AAAAACCTAA
TAAAAGACTA AAAATATAAT CAAAGTCCAA GGACTATCAA ATAAAATAAA AATCTGAAGT TTGATAAGAT CTTAAAAATA
TATTTAACCG AATAAATTTT GTTCTGAAAT TTTTGTGTCG CCCATTGTAT TCCTTCTGCT TGAATCGTAA ACTTCCGTCA
GTGTCATAGA AGCTACGAAA AAGTTTGCAT TTTAGTTTGT ATAAAAAAAA GGTGTGTATT AGACTACTTT AATT

>Vigan.10G224200.01
ATGTCAACCA CCGCAACTAC AACATCAGAA GAAGTTAGCA GCAACGAGTG GGAAGTGATA CACATGAGCG AGCAAGAAGA
GGATCTGATT CATAGGATGT ACAAGCTGGT CGGAGACAAG TGGAATTTGA TAGCGGGTCG CATTCCGGGT CGTAAAGCAG
AAGAGATAGA GAGATTCTGG ATTATGAGAC ACACTCACAC TTTCTCTGTT ACAAAAAATC AAAGTAAAGC CAAAGACTCT
TGA

>Vigan.10G224200.01
MSTTATTTSE EVSSNEWEVI HMSEQEEDLI HRMYKLVGDK WNLIAGRIPG RKAEEIERFW IMRHTHTFSV TKNQSKAKDS
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