GBrowse Details

Vigan.10G226600.01

Basic Information:
Name: Vigan.10G226600.01
Multiple alignment
Variant Information
Position: Chr10:27224931..27229743 (+ strand)
Length: 4813
Functional Information:
Description: Similar to Uncharacterized protein. [I1JAE3, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: galactose metabolic process (GO:0006012)
Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978)
Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives (GO:0016857)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
UDP-glucose 4-epimerase GalE (IPR005886)
Nucleotide sugar epimerase (IPR008089)
NAD(P)-binding domain (IPR016040)
UDP-glucose 4-epimerase C-terminal domain (IPR025308)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1437.32,767.18,37.55,18.00,6.50,12.71,18.52,8.50
Arabidopsis thaliana homolog: AT1G64440.1, AT4G10960.1, AT4G23920.1
Automatic updates:
Name: NM_001420949 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula UDP-glucose 4-epimerase GEPI48 (LOC11439983), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001420965 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula UDP-glucose 4-epimerase GEPI48 (LOC25502196), mRNA.
PubMed ID: 31837401 NCBI(pubmed)
23136381 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:27224931..27225179 (+ strand)
Length: 249
Type: five_prime_UTR
Position: Chr10:27225180..27225500 (+ strand)
Length: 321
Type: CDS
Position: Chr10:27226028..27226077 (+ strand)
Length: 50
Type: CDS
Position: Chr10:27226247..27226382 (+ strand)
Length: 136
Type: CDS
Position: Chr10:27227344..27227445 (+ strand)
Length: 102
Type: CDS
Position: Chr10:27227725..27227952 (+ strand)
Length: 228
Type: CDS
Position: Chr10:27228271..27228349 (+ strand)
Length: 79
Type: CDS
Position: Chr10:27228479..27228561 (+ strand)
Length: 83
Type: CDS
Position: Chr10:27229033..27229124 (+ strand)
Length: 92
Type: CDS
Position: Chr10:27229395..27229491 (+ strand)
Length: 97
Type: CDS
Position: Chr10:27229492..27229743 (+ strand)
Length: 252
Type: three_prime_UTR


>Vigan.10G226600.01
GATTAAATAA GATTTAATGT ATTAGTTTTA AGAAAGCAAT GATTAAAACG GAAATAGTTG TGAAAGAGAA AAGAAAGCAA
TGATTAATGG AAACGGCCAC ACTGGAAATC CACGTGGCTG ATCTGTTGTT CCCTCCATAA ATATTCGCAT AATAGGCATT
GCAATTCCAA TTTCATAGAA GTTGCAAAGC AAACACAACA CAGCACATAG CTTTCAGAAC TTGTCACGCA ATTCTCGCCG
TCGACGAACA TGGCATCGCG AGTCAGCATT GGCAACCTCA CCGCCACCAA GCCACCGTAT GCTATTAATT CTCCTCGTTT
TTGTTCACCG CATAAATCTT CTAACGCTCT TTCTCACCAA AACGCTGCGC AACACAACGA CATCATGCTC CAAAGAACCG
TGCTCGTAAC CGGTGGAGCC GGATACATCG GAAGCCACAC CGTTCTTCAA CTACTCCTCG GAGGTTTCGC AACCGTCGTC
GTCGACAACC TCGACAATTC CTCCGAGGTT GCCATCCGAA GAGTCCGGGA ACTCGCAGGC GAGTTTGGGA ATAACCTATC
CTTCCACAAG GTGGACCTAC GGGACAGAGA GGCTCTAGAG CAAATTTTTG TTTCTACACA GTTTGATGCT GTCATACATT
TTGCTGGACT GAAAGCAGTG GGAGAAAGTG TGCAAAAACC TTTACTATAT TACAACAACA ACTTGACTGG GACAATCACT
CTATTGGAAG TCATGGCTGC CCATGGATGC AAAAAGCTTG TGTTCTCGTC TTCAGCAACT GTATATGGTT GGCCAAAGGA
GGTTCCGTGT ACAGAAGAGT TCCCTCTGTC AGCGATGAAT CCATATGGCC GAACTAAGCT TATTATTGAA GAAATTTGTC
GGGATGTCCA CCAAGCGGAG CCAGATTGGA AAATAATATT GTTAAGGTAT TTCAACCCAG TTGGTGCACA CCCTAGTGGT
TATATTGGGG AGGATCCTCG TGGAATTCCA AACAATCTCA TGCCATTTGT TCAGCAAGTA GCAGTTGGCA GACGACCTGC
GCTGACAGTT TTTGGAAATG ATTATAATAC AGTTGATGGC ACTGGGGTTC GGGATTATAT TCATGTTGTT GATTTAGCAG
ATGGGCACAT TGCTGCATTA CTTAAACTAG ACGAACCTAA TATAGGTTGT GAGGTTTATA ACCTGGGAAC AGGAAAGGGA
ACATCGGTTT TGGAGATGGT TAGGGCTTTT GAAGCTGCAT CTGGAAAGAA AATTCCTCTT GTGATGGCTG GCCGTAGACC
TGGTGATGCT GAAATTGTTT ATGCATCCAC TAAAAAAGCG GAAAGAGAGC TTAAATGGAA GGCAAAATAT GGCATTGATG
AGATGTGCCG AGATCAATGG AATTGGGCTA GCAAAAACCC TTACGGCTAT GAAGATCAGG AGGACTCCAC AGATTAACTA
CACAGTATTC TGAACTCTCC CCCACCGTAG TCCATAGGTC TTGCATTATC ATGATTCGTA GTTACATGGT AAATAAGTAG
TGATTTACTA TACTGTAATC TAAAAGTTCT TTAGGTTATT GATTATTAGA TTCAGGTTCT CTCATTTTCA CCTCCTGTTC
TGTAAATCTA ATATCTCATG TTTGTTTAAA GTGTGACTAA CAATGTATTC TTACCTCATT ATTTACTACC TTTACCAATA
AAATAGCAT

>Vigan.10G226600.01
ATGGCATCGC GAGTCAGCAT TGGCAACCTC ACCGCCACCA AGCCACCGTA TGCTATTAAT TCTCCTCGTT TTTGTTCACC
GCATAAATCT TCTAACGCTC TTTCTCACCA AAACGCTGCG CAACACAACG ACATCATGCT CCAAAGAACC GTGCTCGTAA
CCGGTGGAGC CGGATACATC GGAAGCCACA CCGTTCTTCA ACTACTCCTC GGAGGTTTCG CAACCGTCGT CGTCGACAAC
CTCGACAATT CCTCCGAGGT TGCCATCCGA AGAGTCCGGG AACTCGCAGG CGAGTTTGGG AATAACCTAT CCTTCCACAA
GGTGGACCTA CGGGACAGAG AGGCTCTAGA GCAAATTTTT GTTTCTACAC AGTTTGATGC TGTCATACAT TTTGCTGGAC
TGAAAGCAGT GGGAGAAAGT GTGCAAAAAC CTTTACTATA TTACAACAAC AACTTGACTG GGACAATCAC TCTATTGGAA
GTCATGGCTG CCCATGGATG CAAAAAGCTT GTGTTCTCGT CTTCAGCAAC TGTATATGGT TGGCCAAAGG AGGTTCCGTG
TACAGAAGAG TTCCCTCTGT CAGCGATGAA TCCATATGGC CGAACTAAGC TTATTATTGA AGAAATTTGT CGGGATGTCC
ACCAAGCGGA GCCAGATTGG AAAATAATAT TGTTAAGGTA TTTCAACCCA GTTGGTGCAC ACCCTAGTGG TTATATTGGG
GAGGATCCTC GTGGAATTCC AAACAATCTC ATGCCATTTG TTCAGCAAGT AGCAGTTGGC AGACGACCTG CGCTGACAGT
TTTTGGAAAT GATTATAATA CAGTTGATGG CACTGGGGTT CGGGATTATA TTCATGTTGT TGATTTAGCA GATGGGCACA
TTGCTGCATT ACTTAAACTA GACGAACCTA ATATAGGTTG TGAGGTTTAT AACCTGGGAA CAGGAAAGGG AACATCGGTT
TTGGAGATGG TTAGGGCTTT TGAAGCTGCA TCTGGAAAGA AAATTCCTCT TGTGATGGCT GGCCGTAGAC CTGGTGATGC
TGAAATTGTT TATGCATCCA CTAAAAAAGC GGAAAGAGAG CTTAAATGGA AGGCAAAATA TGGCATTGAT GAGATGTGCC
GAGATCAATG GAATTGGGCT AGCAAAAACC CTTACGGCTA TGAAGATCAG GAGGACTCCA CAGATTAA

>Vigan.10G226600.01
MASRVSIGNL TATKPPYAIN SPRFCSPHKS SNALSHQNAA QHNDIMLQRT VLVTGGAGYI GSHTVLQLLL GGFATVVVDN
LDNSSEVAIR RVRELAGEFG NNLSFHKVDL RDREALEQIF VSTQFDAVIH FAGLKAVGES VQKPLLYYNN NLTGTITLLE
VMAAHGCKKL VFSSSATVYG WPKEVPCTEE FPLSAMNPYG RTKLIIEEIC RDVHQAEPDW KIILLRYFNP VGAHPSGYIG
EDPRGIPNNL MPFVQQVAVG RRPALTVFGN DYNTVDGTGV RDYIHVVDLA DGHIAALLKL DEPNIGCEVY NLGTGKGTSV
LEMVRAFEAA SGKKIPLVMA GRRPGDAEIV YASTKKAERE LKWKAKYGID EMCRDQWNWA SKNPYGYEDQ EDSTD*