GBrowse Details

Vigan.10G228400.01

Basic Information:
Name: Vigan.10G228400.01
Multiple alignment
Variant Information
Position: Chr10:27337760..27341209 (- strand)
Length: 3450
Functional Information:
Description: Similar to Uncharacterized protein. [I1JAG0, Glycine max]
GO: Biological Process: RNA processing (GO:0006396)
Cellular Component: nucleus (GO:0005634)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: RNA binding (GO:0003723)
InterPro: RNA recognition motif domain (IPR000504)
RNA-binding motif protein 8 (IPR008111)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:257.95,154.42,39.36,45.56,61.39,78.94,57.43,42.26
Arabidopsis thaliana homolog: AT1G51510.1
Automatic updates:
Name: NM_001249233 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527187 (LOC100527187), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:27337760..27338387 (- strand)
Length: 628
Type: three_prime_UTR
Position: Chr10:27338388..27338433 (- strand)
Length: 46
Type: CDS
Position: Chr10:27338989..27339140 (- strand)
Length: 152
Type: CDS
Position: Chr10:27340574..27340710 (- strand)
Length: 137
Type: CDS
Position: Chr10:27340797..27341070 (- strand)
Length: 274
Type: CDS
Position: Chr10:27341071..27341209 (- strand)
Length: 139
Type: five_prime_UTR


>Vigan.10G228400.01
CCTAGATAAA CCCCAAAAGG ATTTTACCAT TGCAAGCAAC AAAATACACA TAAAAGGGTT CTCTCTCTTC ACTCGCAGAA
CGTGCTCCAA CTCATATCGA ACTCAATTTT ACTGTGTCGA GAAAGAAGCA GAGGCGGAAA TGCAAGGTGG CGCAGCCGAC
GGAGAAGCCT TGGATTTCGA GCCCGAGGAC GATGACTTGA TGGACGAGGA CGGCGCTCCC GACGCCGACG CTTCTCCGCC
TCACCCTAAG CTTAAATCAG CCATCACCGC CGCAGCTACT TCCTCTCTCA CCGCTCCCAA GAAGACCAAG GGTCGCGGTT
TCCGTCAGGA CACCGATGCC AACCGCAACA CTCGACTCTC CGGCTCCGAC TTCGACTCCC TCACCACCGA GGGTGGCCCT
GGACCACAGA GATCCATTGA AGGATGGATC ATTCTGGTGA CCGGCGTGCA CGAGGAAGCG CAAGAGGATG ATTTGCAAAA
CGCCTTTGGT GAATACGGAG AGATTAAGAA CCTGCATTTG AATCTCAATC GCCGCACTGG TTTTGTCAAA GGTTATGCAT
TGATTGAATA CGAGCGTGCT GAAGAAGCTC GAAATGCAAT AGAGAATTTG AATGGATCCG AGCTTCTTAC CCAATCCATT
TATGTTGACT GGGCCTTCAG CAGTGGACCT ATTAATGAGT CAGTCAGAAG AAAGAATGCT AGAGCACCTC GTGAACGGCG
CTCCAGGAGC CCCCGGAGGA GATATTGACA TGTGTATTCA GTAAATGTTT GTGTTGATGT GTGTGGACCG TAAATTAGCA
GCTTGGTTTA TTGCTATAGC TGTGGAGGAT TTTTCTGATA GTTGTGCTTC CGTCAGGCAA AATACATATT TGATGCTGGC
GATTCTCATC GGATGATTGG TTTAAACTTT TAGCTAGTTT ATTAAGGTGT ATGCTGTTTA ACACAATTGT TTCATTATAG
TAACGTGTTT TGGATATGCT TTTTCTTACA TGTAACGTTG TTCTGTTGAG GAACGTAGGG TCTCTTTTCG TTTGCAGCTT
GTTTCTGCTA CATGTTAAAG TTTGTGTCGG AGCCTCTTTT TTCCTTTTCT TTTTTGGTTT TGGCTACAGA TCTCTTTTTT
TTTTCAATTT ATGGATGTTT TTCTCATATC TTTTTATTTA CCTGTCCGTG CATTTAAATG AGTATTGGTA TTTGTTACGT
GTAAAGGCTT AATAAAGTTA AAAGAGTTAT GGAACACCTA TATTTGGGTT TGGTGGATGT TTGTCGTTTA GCTATAAAAC
CCGCGTGTGA TGCACACTTC TTAATACCAG TCAAATAAAT GGCTTGCTTC GTGCGCATGC ATGCTAAATA TTAACACGGT
GAAAAGGTTG CCAATT

>Vigan.10G228400.01
ATGCAAGGTG GCGCAGCCGA CGGAGAAGCC TTGGATTTCG AGCCCGAGGA CGATGACTTG ATGGACGAGG ACGGCGCTCC
CGACGCCGAC GCTTCTCCGC CTCACCCTAA GCTTAAATCA GCCATCACCG CCGCAGCTAC TTCCTCTCTC ACCGCTCCCA
AGAAGACCAA GGGTCGCGGT TTCCGTCAGG ACACCGATGC CAACCGCAAC ACTCGACTCT CCGGCTCCGA CTTCGACTCC
CTCACCACCG AGGGTGGCCC TGGACCACAG AGATCCATTG AAGGATGGAT CATTCTGGTG ACCGGCGTGC ACGAGGAAGC
GCAAGAGGAT GATTTGCAAA ACGCCTTTGG TGAATACGGA GAGATTAAGA ACCTGCATTT GAATCTCAAT CGCCGCACTG
GTTTTGTCAA AGGTTATGCA TTGATTGAAT ACGAGCGTGC TGAAGAAGCT CGAAATGCAA TAGAGAATTT GAATGGATCC
GAGCTTCTTA CCCAATCCAT TTATGTTGAC TGGGCCTTCA GCAGTGGACC TATTAATGAG TCAGTCAGAA GAAAGAATGC
TAGAGCACCT CGTGAACGGC GCTCCAGGAG CCCCCGGAGG AGATATTGA

>Vigan.10G228400.01
MQGGAADGEA LDFEPEDDDL MDEDGAPDAD ASPPHPKLKS AITAAATSSL TAPKKTKGRG FRQDTDANRN TRLSGSDFDS
LTTEGGPGPQ RSIEGWIILV TGVHEEAQED DLQNAFGEYG EIKNLHLNLN RRTGFVKGYA LIEYERAEEA RNAIENLNGS
ELLTQSIYVD WAFSSGPINE SVRRKNARAP RERRSRSPRR RY*