VIGGS:GBrowse

Vigan.10G230000.01

Basic Information:

Name:	Vigan.10G230000.01 Multiple alignment Variant Information
Position:	Chr10:27440732..27444116 (- strand)
Length:	3385

Functional Information:

Description:	Similar to Cytochrome c. [G7K7W9, Medicago truncatula]
GO:	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: electron carrier activity (GO:0009055)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Cytochrome c, class IA/ IB (IPR002327)
	Cytochrome c domain (IPR003088)
	Cytochrome c-like domain (IPR009056)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:31.75,25.98,65.47,16.32,18.97,28.58,11.76,12.40

Automatic updates:

Name:	NM_001248283 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305937 (LOC100305937), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251212 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499929 (LOC100499929), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:27440732..27441578 (- strand)
Length:	847
Type:	three_prime_UTR

Position:	Chr10:27441579..27441674 (- strand)
Length:	96
Type:	CDS

Position:	Chr10:27442438..27442571 (- strand)
Length:	134
Type:	CDS

Position:	Chr10:27443798..27443909 (- strand)
Length:	112
Type:	CDS

Position:	Chr10:27443910..27444116 (- strand)
Length:	207
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G230000.01
CAACGAAAAA AGTTAGGGCT GGCCAAAGAG TCCCGTGGCG ACCGCGTTCC AAATTTGCCA CCCTGCCGCC TCATTTTCTC
CTATATATAT AAATAGAGTC ATGCATAACG CATTGCATGT CTTCCGAATA GTTCATTCCT TTCTACTTTT CCGCGTAATT
CTCCTTTTCC CTTCGATTCT GTCAAACCTA TTCACCTTCC TCCGCGAATG GCGTCCTTCG ATGAGGCTCC TCCCGGCGTT
GCCCAGTCCG GCGACAAAAT CTTCAGGACT AAGTGCGCTC AGTGTCACAC CGTCGAAAAA GGTGCCGGTC ACAAGCAAGG
TCCCAATCTG AATGGGCTGT TTGGAAGGCA ATCAGGCACT ACTCCCGGAT ATTCCTACTC TGCAGCTAAT AAGAACATGG
CCGTAACTTG GGAAGAAAAG ACACTATACG ATTATTTACT TAACCCCAAA AAGTATATTC CAGGGACTAA GATGGTATTT
CCTGGTCTCA AGAAGCCCCA GGAACGTGCT GATCTTATTG CATATCTGAA ACAAGCCACT GCACAGTGAT TATACGTTTT
CGTTCATTCA ATTTTGCAGT GTGTTTTCAA AGTTCGGGAG ATTTAATTTT CGGACGTTTA GTTTTTGCAG GAAGTGCCGT
ATCTTTGGCA AATAATGTAG GCTACATTGG TCTGCAATGC TATTTTGTTC ATTTCGCGTT GCTTTTAGAA AAGCAGCCGA
GCATAGGCTG GTGTAACAAA TTATCTCTTG AAAATTGAAA CATTATTTTC TTCAGCATTT TAGTTAATTG GAGCCACAGC
TCATTATTGT GCTTCGCTGA ATTCATTAAT TATTTTACCG TTCTACTTGA TTTTCTTAGC TGAATATGGT TCCAAGAGCG
GGGAGAGGGT AAGCTAAAGT TCAAGCAAAA CATAATGAAA TTCTATCTAA GATTGAGCAG TCCTGGAGAG TTTTCGACTG
ATTCTTTTTG CATATATTTA ATCTTCCTCA CATTCTTTTC GACTGATATT TGAGTCCCTG TAATCTTCTG AACACGCACC
GCTCTCGAAG AAGAGCATCG TTTATCAATA CCCTTCACCT CTTAATATTG AAGGGGATTG CAATGTCATC CAATGGAAAG
GAGGATCTTG ACCATGCAGA GTTTTGGATG TTGATATTTT AATAGAGGCA CTGCAATTGG TGTTGATATA ATATTATGGT
CAAGCCGGGA CCCCAACCAA TGCTTAGGTT TGATACTTGC AAGACAGAGG AGATCTGCTT GTGAAAGGTA AGGTTTTTTG
TGGAAGGAAT ATGTTTGACA TTTATTCTGC AATTAAGTTT ATATATGTGT TGTTTACAAA TTGATTCAAA CCATTATAGT
GATGACGAAG TCATAATTAA AATTTTCACA AAACAA

[show][hide][copy]CDS

>Vigan.10G230000.01
ATGGCGTCCT TCGATGAGGC TCCTCCCGGC GTTGCCCAGT CCGGCGACAA AATCTTCAGG ACTAAGTGCG CTCAGTGTCA
CACCGTCGAA AAAGGTGCCG GTCACAAGCA AGGTCCCAAT CTGAATGGGC TGTTTGGAAG GCAATCAGGC ACTACTCCCG
GATATTCCTA CTCTGCAGCT AATAAGAACA TGGCCGTAAC TTGGGAAGAA AAGACACTAT ACGATTATTT ACTTAACCCC
AAAAAGTATA TTCCAGGGAC TAAGATGGTA TTTCCTGGTC TCAAGAAGCC CCAGGAACGT GCTGATCTTA TTGCATATCT
GAAACAAGCC ACTGCACAGT GA

[show][hide][copy]PROTEIN

>Vigan.10G230000.01
MASFDEAPPG VAQSGDKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKNMAVTWEE KTLYDYLLNP
KKYIPGTKMV FPGLKKPQER ADLIAYLKQA TAQ*