GBrowse Details

Vigan.10G234400.01

Basic Information:
Name: Vigan.10G234400.01
Multiple alignment
Variant Information
Position: Chr10:27733299..27736721 (+ strand)
Length: 3423
Functional Information:
Description: Similar to NADH-ubiquinone oxidoreductase subunit B17.2, putative. [B9S202, Ricinus communis]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137)
Molecular Function: electron carrier activity (GO:0009055)
InterPro: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (IPR007763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.66,32.96,70.44,32.22,102.60,90.50,61.39,43.46
Arabidopsis thaliana homolog: AT3G03100.1
Automatic updates:
Name: NM_001248156 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500489 (LOC100500489), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248687 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500270 (LOC100500270), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:27733299..27733345 (+ strand)
Length: 47
Type: five_prime_UTR
Position: Chr10:27733346..27733434 (+ strand)
Length: 89
Type: CDS
Position: Chr10:27733770..27733796 (+ strand)
Length: 27
Type: CDS
Position: Chr10:27734289..27734380 (+ strand)
Length: 92
Type: CDS
Position: Chr10:27735965..27736074 (+ strand)
Length: 110
Type: CDS
Position: Chr10:27736193..27736345 (+ strand)
Length: 153
Type: CDS
Position: Chr10:27736346..27736721 (+ strand)
Length: 376
Type: three_prime_UTR


>Vigan.10G234400.01
ACCAAACGCA GCCTTAGCAA TTGTCCAAAA GGAGGAAGAA GAGCGACATG GCGTCGGTGG TGAAGAATGT TCTGAAATCG
ATCAGAGAAA AGGGTTTCGG TACTTTCCTC AGAGAGCTTA AGGATGAAGG CTACCTGAGA TGCCTTCCGG ATGGAAATCT
CTTGCAAACC AAGATCCACA ATATTGGGGC AACGGTTGTT GGTGTTGATA AATTCGGTAA CAAGTATTAT GAGAAGCTTG
GAGACACACA GTATGGAAGA CACAGGTGGG TTGAATATGC AGAGAAAAGT AGGTATAATG CCTCCCAGGT TCCGCCTGAA
TGGCATGGCT GGCTCCACTT CATAACTGAT CACACAGGAG ATGAGCTTCT TCTACTGAAA CCGAAAAGGT ATGGTGTTGA
ACACAAAGAA AATTTGTCTG GAGAAGGTGA ACAGTATATC TATCATTCGA AGGGACATGC CCTTAATCCA GGGCAGAGAG
ACTGGACCAG GTACCAACCA TGGGAGTCCA AGGCCTGAAC CGTCAATATG GGGCAGCTCA GTTGCAGATG TCCTGGATGT
TTGTTTTTTT AATTCTCAAG AATTTTTTTT GCCTTAAGTT AATGAGGTGG AAAGCTGCTT TTTCCTTTTT TAACAATTAA
CAATAAAACG AATTATTAGT GTTGAAAACA GACAAATTCG CATTGAACTT CAAAATCTTT TAGTATAATG TATGCGATCG
TGTTAAAAAA GGATATGCTC TTATTTGCAA CGATATTTTG CCTAGTCTAT TATTTGTACG TGTATTATTT TAATTAACCT
GTCTGATCCA GTGATTGTAG TTACTTGTTA AACCGAACAC CTTATTGGGA AACTGTGAAC ACAGTTCTTT ATCTGAAGGA
TAATTATCGG CTAA

>Vigan.10G234400.01
ATGGCGTCGG TGGTGAAGAA TGTTCTGAAA TCGATCAGAG AAAAGGGTTT CGGTACTTTC CTCAGAGAGC TTAAGGATGA
AGGCTACCTG AGATGCCTTC CGGATGGAAA TCTCTTGCAA ACCAAGATCC ACAATATTGG GGCAACGGTT GTTGGTGTTG
ATAAATTCGG TAACAAGTAT TATGAGAAGC TTGGAGACAC ACAGTATGGA AGACACAGGT GGGTTGAATA TGCAGAGAAA
AGTAGGTATA ATGCCTCCCA GGTTCCGCCT GAATGGCATG GCTGGCTCCA CTTCATAACT GATCACACAG GAGATGAGCT
TCTTCTACTG AAACCGAAAA GGTATGGTGT TGAACACAAA GAAAATTTGT CTGGAGAAGG TGAACAGTAT ATCTATCATT
CGAAGGGACA TGCCCTTAAT CCAGGGCAGA GAGACTGGAC CAGGTACCAA CCATGGGAGT CCAAGGCCTG A

>Vigan.10G234400.01
MASVVKNVLK SIREKGFGTF LRELKDEGYL RCLPDGNLLQ TKIHNIGATV VGVDKFGNKY YEKLGDTQYG RHRWVEYAEK
SRYNASQVPP EWHGWLHFIT DHTGDELLLL KPKRYGVEHK ENLSGEGEQY IYHSKGHALN PGQRDWTRYQ PWESKA*