GBrowse Details

Vigan.10G235500.01

Basic Information:
Name: Vigan.10G235500.01
Multiple alignment
Variant Information
Position: Chr10:27803303..27806358 (- strand)
Length: 3056
Functional Information:
Description: Similar to TOM1-like protein 2-like. [XP_004511421.1, Cicer arietinum]
GO: Biological Process: intracellular protein transport (GO:0006886)
Cellular Component: intracellular (GO:0005622)
InterPro: VHS (IPR002014)
GAT (IPR004152)
ENTH/VHS (IPR008942)
Target of Myb protein 1 (IPR014645)
VHS subgroup (IPR018205)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:243.66,118.55,36.92,48.54,63.11,63.23,66.82,42.57
Arabidopsis thaliana homolog: AT5G16880.1
Automatic updates:
Name: NM_001252950 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TOM1-like protein 2-like (LOC100793134), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:27803303..27803647 (- strand)
Length: 345
Type: three_prime_UTR
Position: Chr10:27803648..27804067 (- strand)
Length: 420
Type: CDS
Position: Chr10:27805195..27805464 (- strand)
Length: 270
Type: CDS
Position: Chr10:27805592..27806110 (- strand)
Length: 519
Type: CDS
Position: Chr10:27806111..27806358 (- strand)
Length: 248
Type: five_prime_UTR


>Vigan.10G235500.01
AAACAATTAA ATTATTTTAA CATATGAATT GAGAAGAAAC CCTAAATATG ATATTTTTAA AGAAAAGTTA AAACACTCTG
TTCCTATTAA AAGGAAACAA CAGAGAAAGG GAAAGGGGGA AAACAGAGTG TTGCGTTGCG AAGGGGTAGA CTTTGCCCAG
TCGTCACGCG TTGTTGAGAG CACCGAACAC TTCACTGTGA AAAACCCTTT TCCGTTGATC TTGTTTGGAT CAGAATCAGA
ATCAGAAGAT GAGCGATAAT CTGATGGAAA AAGTGAATGC TTTGGGGGAG CGTCTGAAAA TCGGAGGAGT GGAAGTGGGT
CGAAAGATGA GTGAGGGAAT GAGTTCGATG AGCTTCAAGG TCAGAGAGTT CTTCCAGGGC CCGAATCAGG CCGACAAGCT
GGTGGAGGAC GCCACTTCGG AGGCCCTAGA CGAGCCCGAT TGGGCCCTCA ACCTCGATCT CTGCGACCTC ATCAACACCG
ACAAGCTCTC CAGCGTAGAG CTCATAAGGG GAATCAAGAA GAGGATCATG GTGAAAAGCC CTAGGGTTCA GTACCTCGCC
CTCGTCCTCC TCGAAACCTG CGTCAAAAAC TGCGAGAAGG CCTTCTCCGA GGTCGCCGCC GAGCGTGTTC TCGACGAGAT
GGTCAGACTC ATCGACGACC CCCAGACGGT CGTCAACAAC CGGAACAAGG CCTTGATGAT GATCGAAGCC TGGGGTGAGT
CAACCGGCGA GTTGCGATAT CTCCCCGTCT TTGAAGAAAC TTACAAGAGT CTGAAATCGA GGGGTATAAG GTTTCCTGGT
CGTGACAATG AAAGCTTGGC TCCTATATTC ACTCCGCCTC GTTCAGTTTC TGCTACGGAG GTTGATGTCA GTCTTCAACA
GCAGTTTGAG CATGATGTTC CTGGGCAGTT TGAGCATGAT GTTCCTGTTC AGAGTTTTTC TCCTGAACAG ACTAAGGAAG
CCTTTGATGT TGCGAGAAAT AGCATTGAGC TTCTTTCCAC TGTGTTGTCG TCTTCGCCGC AACAGGATGC TTTACAGGAT
GATTTGACCT CCACACTTGT ACAGCAGTGT CGTCGGTCAC AAACTACTGT GCAGAGAATT GTTGAAACTG CTGGGGATAA
TGAAGCACTG CTTTTTGAGG CCTTGAACGT TAACGATGAG ATTCAGAAGG TTCTGACCAA GTACGAAGAG TTGAAGCAGC
CTGCAGCTGC TCCACTTCAG CCTGAACCAG CCATGATACC AGTTGCTGTG GAGCCAGACG AATCACCACG CCATATTAAA
GAAGATGCCT TGATTAGAAA GCCCGCTGGA TCAAGAACAC CCCAGGGAGG GAGCAACGAT GACATGATGG ATGATCTTGA
TGAGATGATT TTTGGGAAAA AAAGTGGTGA AGCATCAGAT GGGGGACACG ATACAAAGAA ACAGCAATCA TCGAAAGATG
ATCTCATCTC TTTCTGAGCT GCAATACTAA TTTACGATGA ATATAGAACA GAGTGGTTTT AATGTCACGT TACTTTTATA
TCCAGATGTT GATTCTGAAG ATTGCTCGCT CCATTATTTT TTTTGCACTT TGTGTGCAAC TTATGTTTGC ATTATGGTAT
ATAAGTGATC TACAGACAAG ATATACATGG GAAACTCTGG ATAATTTCAA CGAGGTTTCG TTCACTCTCT GTCATCTGTT
ACATAACAAT GATTTTTTCT TGTTCATGTA TGATGATAAT GCCACATCAG AATTTAGTTA GATAACACCA AGGCTACTTT
TTTCTGCACT TTAACAATGT CAATTTACTT TTTATGTTTT GG

>Vigan.10G235500.01
ATGAGCGATA ATCTGATGGA AAAAGTGAAT GCTTTGGGGG AGCGTCTGAA AATCGGAGGA GTGGAAGTGG GTCGAAAGAT
GAGTGAGGGA ATGAGTTCGA TGAGCTTCAA GGTCAGAGAG TTCTTCCAGG GCCCGAATCA GGCCGACAAG CTGGTGGAGG
ACGCCACTTC GGAGGCCCTA GACGAGCCCG ATTGGGCCCT CAACCTCGAT CTCTGCGACC TCATCAACAC CGACAAGCTC
TCCAGCGTAG AGCTCATAAG GGGAATCAAG AAGAGGATCA TGGTGAAAAG CCCTAGGGTT CAGTACCTCG CCCTCGTCCT
CCTCGAAACC TGCGTCAAAA ACTGCGAGAA GGCCTTCTCC GAGGTCGCCG CCGAGCGTGT TCTCGACGAG ATGGTCAGAC
TCATCGACGA CCCCCAGACG GTCGTCAACA ACCGGAACAA GGCCTTGATG ATGATCGAAG CCTGGGGTGA GTCAACCGGC
GAGTTGCGAT ATCTCCCCGT CTTTGAAGAA ACTTACAAGA GTCTGAAATC GAGGGGTATA AGGTTTCCTG GTCGTGACAA
TGAAAGCTTG GCTCCTATAT TCACTCCGCC TCGTTCAGTT TCTGCTACGG AGGTTGATGT CAGTCTTCAA CAGCAGTTTG
AGCATGATGT TCCTGGGCAG TTTGAGCATG ATGTTCCTGT TCAGAGTTTT TCTCCTGAAC AGACTAAGGA AGCCTTTGAT
GTTGCGAGAA ATAGCATTGA GCTTCTTTCC ACTGTGTTGT CGTCTTCGCC GCAACAGGAT GCTTTACAGG ATGATTTGAC
CTCCACACTT GTACAGCAGT GTCGTCGGTC ACAAACTACT GTGCAGAGAA TTGTTGAAAC TGCTGGGGAT AATGAAGCAC
TGCTTTTTGA GGCCTTGAAC GTTAACGATG AGATTCAGAA GGTTCTGACC AAGTACGAAG AGTTGAAGCA GCCTGCAGCT
GCTCCACTTC AGCCTGAACC AGCCATGATA CCAGTTGCTG TGGAGCCAGA CGAATCACCA CGCCATATTA AAGAAGATGC
CTTGATTAGA AAGCCCGCTG GATCAAGAAC ACCCCAGGGA GGGAGCAACG ATGACATGAT GGATGATCTT GATGAGATGA
TTTTTGGGAA AAAAAGTGGT GAAGCATCAG ATGGGGGACA CGATACAAAG AAACAGCAAT CATCGAAAGA TGATCTCATC
TCTTTCTGA

>Vigan.10G235500.01
MSDNLMEKVN ALGERLKIGG VEVGRKMSEG MSSMSFKVRE FFQGPNQADK LVEDATSEAL DEPDWALNLD LCDLINTDKL
SSVELIRGIK KRIMVKSPRV QYLALVLLET CVKNCEKAFS EVAAERVLDE MVRLIDDPQT VVNNRNKALM MIEAWGESTG
ELRYLPVFEE TYKSLKSRGI RFPGRDNESL APIFTPPRSV SATEVDVSLQ QQFEHDVPGQ FEHDVPVQSF SPEQTKEAFD
VARNSIELLS TVLSSSPQQD ALQDDLTSTL VQQCRRSQTT VQRIVETAGD NEALLFEALN VNDEIQKVLT KYEELKQPAA
APLQPEPAMI PVAVEPDESP RHIKEDALIR KPAGSRTPQG GSNDDMMDDL DEMIFGKKSG EASDGGHDTK KQQSSKDDLI
SF*