GBrowse Details

Vigan.10G239300.01

Basic Information:
Name: Vigan.10G239300.01
Multiple alignment
Variant Information
Position: Chr10:28052948..28055731 (- strand)
Length: 2784
Functional Information:
Description: Similar to 40S ribosomal protein S3a. [U5U2I1, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S3Ae (IPR001593)
Ribosomal protein S3Ae, conserved site (IPR018281)
40S ribosomal protein S1/3, eukaryotes (IPR027500)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:277.60,415.53,139.43,95.00,217.56,266.71,136.25,109.24
Automatic updates:
Name: NM_001279061 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum 40S ribosomal protein S3a (RS3A), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:28052948..28053465 (- strand)
Length: 518
Type: three_prime_UTR
Position: Chr10:28053466..28053561 (- strand)
Length: 96
Type: CDS
Position: Chr10:28053906..28054106 (- strand)
Length: 201
Type: CDS
Position: Chr10:28054438..28054623 (- strand)
Length: 186
Type: CDS
Position: Chr10:28054701..28054838 (- strand)
Length: 138
Type: CDS
Position: Chr10:28055336..28055441 (- strand)
Length: 106
Type: CDS
Position: Chr10:28055537..28055595 (- strand)
Length: 59
Type: CDS
Position: Chr10:28055596..28055731 (- strand)
Length: 136
Type: five_prime_UTR


>Vigan.10G239300.01
AAACAAAGCC CAAACCCAAT AAGGGTAGGA ATATAAAGGG TGTTAACTGA TAGTAGTTGC GCTGGGAGAC GAAGCTAGGG
TTTCAGTCGG CTGCGGAGAA GACCTGACTT GACCTTGAAG CAGCAGAAGA GCAACTATGG CGGTTGGAAA GAATAAGAGG
ATTTCGAAGG GAAAGAAGGG TGGCAAGAAG AAGGCCGCCG ATCCCTTTTC CAAGAAGGAT TGGTACGATA TCAAGGCCCC
TTCTGTGTTC CAGGTCAAGA ATGTGGGCAA GACCCTCGTC AGTCGTACCC AGGGCACCAA GATTGCTTCG GAAGGACTCA
AACACAGAGT GTTTGAGGTC TCATTGGCTG ATCTTCAAGG GGATGAGGAC CATGCCTTCA AGAAGATCCG TTTGAGAGCC
GAGGATGTTC AAGGAAAGAA TGTTTTGACA AACTTTTGGG GAATGGATTT CACAACTGAC AAGCTGAGGT CTTTGGTCCG
AAAATGGCAA ACTTTGATCG AAGCTCATGT AGATGTGAAG ACCACTGATA ATTACACTCT GAGGATGTTC TGCATTGGCT
TTACTAAGAG GCGTGCCAAC CAAGTGAAGA GGACTTGCTA CGCACAATCG AGCCAAATTA GACAGATCCG CAGGAAAATG
AGAGAGATAA TGGTTAACCA GGCAACAGCC TGTGATTTGA AAGAACTGGT CCGCAAGTTC ATCCCTGAGA TGATTGGCAA
AGAGATTGAG AAAGCAACAT CAAGCATCTA TCCCCTACAA AATGTGTTCA TTCGTAAAGT TAAGATCCTG AAAGCTCCAA
AGTTTGACCT TGGCAAATTG ATGGAGGTTC ATGGGGATTA CTCGGAAGAC GTTGGAACAA AGGTTGACAG ACCTGCTGAT
GAAACAGTAG TTGAAGGAAC AACTGAAGTA GTTGGAGCTT GAACTCGCTC ATGATGAATT TTTGTTTGTT TAGAATCCCT
GTTGCATTTA CTAATATTTA TACTTAAATT TTGTTTTGGC ATTTAGAAGA GCATTTGGTT TTTCGATATG GATTTTCGGT
TTTTAATCTT TATTGGAGAC GCTGAAATTT CTCTGCCTAT TCCATGTGCT TCCCTACGAT AATTTGTGCA ATCTTTGTAT
ATTATTTTTC CATAGATCGT GCAATGGGAT GAAATGTGTG GCTGCCTATC TGAATTGAAC ATCCAACCAT TTGCAAACCT
TCGGCTACTT TGCAGCATTC TTTTAGCCTT TTACTTCACC TTTTGTCAGC TGTTAGTTCC TCAGACATTC GACGAAACAT
TTTGCAGCAT TCTCGAATTT TAACCAACCT TTTGATATGA TATGCATGTT TGGGCTGAAT CATCGTGCCT CTGTAATCGT
TTATTGGTGA TAAGGAAGTT CATTAAACAA TAAGTTTGTG GTAGTATTAA ATGTGGTGGG TTGATTTTTC TTATTGCTAA


>Vigan.10G239300.01
ATGGCGGTTG GAAAGAATAA GAGGATTTCG AAGGGAAAGA AGGGTGGCAA GAAGAAGGCC GCCGATCCCT TTTCCAAGAA
GGATTGGTAC GATATCAAGG CCCCTTCTGT GTTCCAGGTC AAGAATGTGG GCAAGACCCT CGTCAGTCGT ACCCAGGGCA
CCAAGATTGC TTCGGAAGGA CTCAAACACA GAGTGTTTGA GGTCTCATTG GCTGATCTTC AAGGGGATGA GGACCATGCC
TTCAAGAAGA TCCGTTTGAG AGCCGAGGAT GTTCAAGGAA AGAATGTTTT GACAAACTTT TGGGGAATGG ATTTCACAAC
TGACAAGCTG AGGTCTTTGG TCCGAAAATG GCAAACTTTG ATCGAAGCTC ATGTAGATGT GAAGACCACT GATAATTACA
CTCTGAGGAT GTTCTGCATT GGCTTTACTA AGAGGCGTGC CAACCAAGTG AAGAGGACTT GCTACGCACA ATCGAGCCAA
ATTAGACAGA TCCGCAGGAA AATGAGAGAG ATAATGGTTA ACCAGGCAAC AGCCTGTGAT TTGAAAGAAC TGGTCCGCAA
GTTCATCCCT GAGATGATTG GCAAAGAGAT TGAGAAAGCA ACATCAAGCA TCTATCCCCT ACAAAATGTG TTCATTCGTA
AAGTTAAGAT CCTGAAAGCT CCAAAGTTTG ACCTTGGCAA ATTGATGGAG GTTCATGGGG ATTACTCGGA AGACGTTGGA
ACAAAGGTTG ACAGACCTGC TGATGAAACA GTAGTTGAAG GAACAACTGA AGTAGTTGGA GCTTGA

>Vigan.10G239300.01
MAVGKNKRIS KGKKGGKKKA ADPFSKKDWY DIKAPSVFQV KNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHA
FKKIRLRAED VQGKNVLTNF WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DNYTLRMFCI GFTKRRANQV KRTCYAQSSQ
IRQIRRKMRE IMVNQATACD LKELVRKFIP EMIGKEIEKA TSSIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYSEDVG
TKVDRPADET VVEGTTEVVG A*