GBrowse Details

Vigan.10G242200.01

Basic Information:
Name: Vigan.10G242200.01
Multiple alignment
Variant Information
Position: Chr10:28274779..28280408 (+ strand)
Length: 5630
Functional Information:
Description: Similar to Uncharacterized protein. [I1LFT3, Glycine max]
InterPro: SNARE associated Golgi protein (IPR015414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.36,23.22,25.71,23.39,22.37,12.79,19.84,23.48
Arabidopsis thaliana homolog: AT1G05360.1, AT4G14950.1
Automatic updates:
Name: NM_001255200 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuole membrane protein 1-like (LOC100810304), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:28274779..28275089 (+ strand)
Length: 311
Type: five_prime_UTR
Position: Chr10:28275090..28275147 (+ strand)
Length: 58
Type: CDS
Position: Chr10:28275967..28276178 (+ strand)
Length: 212
Type: CDS
Position: Chr10:28276421..28276499 (+ strand)
Length: 79
Type: CDS
Position: Chr10:28276774..28277073 (+ strand)
Length: 300
Type: CDS
Position: Chr10:28278142..28278278 (+ strand)
Length: 137
Type: CDS
Position: Chr10:28278747..28278863 (+ strand)
Length: 117
Type: CDS
Position: Chr10:28279491..28279670 (+ strand)
Length: 180
Type: CDS
Position: Chr10:28279836..28280015 (+ strand)
Length: 180
Type: CDS
Position: Chr10:28280016..28280408 (+ strand)
Length: 393
Type: three_prime_UTR


>Vigan.10G242200.01
TTACTCATGA GGAGGGAAGA GATTCATTAT ATTTGGGAGG GGAATAGGAC GAAGTGGATG AGAGTGTGCG TAACAAACTA
AATTAGGGCT ACCCGATCTT CACGCAAACC ACCACTCTGA TTTTAATTTT CTAGATCTGC AGATTCCGCT GAAATCATTT
CGAAGCCTAT CCAAATTTTT AGCTTTCAAT TTTATTTTTG TGTATCTTTT CTGAATCAGA GTGTTGATTC CAATTGGGGT
GCTGCAAAAC TAGAGCGTAG ATAGAGAAGG GTATACAAAG CAGAGTTTCC CCTCTTAGCA TGTGAGCAAT AATGGGCTCT
GGAAATATAG TATCTTCTTC TTCCGGGCGC CCTGATTTGT CTATCTCTGA GCTACGTGAG AAGTACGAGT TGGAGCTAGA
AAATTTGACT CTGACCGCAC AACCCTTTAA AACATTGAAA TTCTTCACGT TAGCTGTTAT TCAATGCATC AAGAAAACAA
CATTATATCT ATTGGCAAAA GGTGGGTGGG TTATGCTTTT CAGTGTTGCG GTTGGGATTT TTGGCATAGT GCTCATGACC
CTCGGTGGAC TCCAAGAGAA GCATCTTGAG GAGCTTCTTG AATATTTTCG CTTTGGACTG TGGTGGGTGG CCCTTGGCGT
TGCTTCTTCA ATTGGTCTTG GATCTGGTTT GCACACATTT GTCCTATATT TAGGTCCACA CATAGCATTG TTCACAATAA
AAGCAGTGCA GTGTGGCCGA GTTGATCTGA AAAGTGCTCC ATATGATACA ATACAATTAA AACGAGGTCC TTCTTGGCTT
GATAAAGACT GTTCTGAGTT TGGGCCACCA TTATTCCAGT CAGTCTATGG TTCACAGGTT CCTCTTAGCA GCATTTTGCC
TCAAGTTCAG CTGGAGGCTA TTTTATGGGG TATGGGAACA GCAATAGGCG AGCTTCCTCC TTATTTTATA TCCAGGGCAG
CAAGCTTGTC TGGGAGCAGA GTGGATGCAA TCGAAGAATT AGATAGTGAT GATAAAGGAG TCTTGAATAG AATCAAGTGC
TGGTTTCTTT CACACTCGCA ACATTTGAAT TTTGTTACTA TTCTAATACT TGCTTCGGTT CCAAATCCTT TATTTGACCT
TGCTGGCATC ATGTGTGGAC AATTTGGCAT TCCATTTTGG AAATTTTTTC TTGCAACATT GATTGGAAAG GCAATTATTA
AAACTCACAT ACAGACGCTA TTCATCATCT CAGTTTGCAA CAATCAACTT CTTAACTGGA TTGAGAATGA ATTTATTTGG
GTTCTCAGTC ACATACCTGG TTTTGCATCC GTCTTGCCTA GAGTGACTGC CAGTCTCCAT GCGATGAAAG ATAAGTATTT
GAAAGCTCCC AATCCAGCTT CCCCAAATAA GCAGGGGAAA AAGTGGGATT TTTCTTTTTC TTCAGTCTGG AACACTATCG
TGTGGCTCAT GCTTATGAAC TTCTTTGTTA AGATAGTGAA TGCAACTGCC CAGAATCATC TGAAGAAACA GCAGGAGAAA
CATATTTCTG AATTAACGGA AAAGTCTACC CCAACAGACT CAGGCGTACA ATGAATTGTT TATGTTCTGC TTGTGTCGCC
CTTTTTTTAG CGGTTCCTTC TGCAAGCAGA AAATTGAAAT TCAAATTACA GCAATTTCTT TTGGCCCCAC AGAAGTTACC
CTGAAAATCT GCATTAGAGG TCCTGCCAGG AGCTTCTTTA GGAATGAATA TACACAGTAG GCAACTAAAG TTGCAACTTT
ATTTTAATTT GGGGCGACCA TTGGATTTTA GCTTTAACCC TTATTAATTA TTTGCTGCTC TAATGGAATT ATAAGAGTTC
TATTCTTTTG CATTAGTAAG ACAAATTATT AGTTCCTATC TCTGGTAAAC AACAAATTGT TCCCTTTCTC TCTTGCCCTA
TCGCTTGGTT TTAATCGTTA TAGTTGCCCG CTTCAAATAA TGCATCG

>Vigan.10G242200.01
ATGGGCTCTG GAAATATAGT ATCTTCTTCT TCCGGGCGCC CTGATTTGTC TATCTCTGAG CTACGTGAGA AGTACGAGTT
GGAGCTAGAA AATTTGACTC TGACCGCACA ACCCTTTAAA ACATTGAAAT TCTTCACGTT AGCTGTTATT CAATGCATCA
AGAAAACAAC ATTATATCTA TTGGCAAAAG GTGGGTGGGT TATGCTTTTC AGTGTTGCGG TTGGGATTTT TGGCATAGTG
CTCATGACCC TCGGTGGACT CCAAGAGAAG CATCTTGAGG AGCTTCTTGA ATATTTTCGC TTTGGACTGT GGTGGGTGGC
CCTTGGCGTT GCTTCTTCAA TTGGTCTTGG ATCTGGTTTG CACACATTTG TCCTATATTT AGGTCCACAC ATAGCATTGT
TCACAATAAA AGCAGTGCAG TGTGGCCGAG TTGATCTGAA AAGTGCTCCA TATGATACAA TACAATTAAA ACGAGGTCCT
TCTTGGCTTG ATAAAGACTG TTCTGAGTTT GGGCCACCAT TATTCCAGTC AGTCTATGGT TCACAGGTTC CTCTTAGCAG
CATTTTGCCT CAAGTTCAGC TGGAGGCTAT TTTATGGGGT ATGGGAACAG CAATAGGCGA GCTTCCTCCT TATTTTATAT
CCAGGGCAGC AAGCTTGTCT GGGAGCAGAG TGGATGCAAT CGAAGAATTA GATAGTGATG ATAAAGGAGT CTTGAATAGA
ATCAAGTGCT GGTTTCTTTC ACACTCGCAA CATTTGAATT TTGTTACTAT TCTAATACTT GCTTCGGTTC CAAATCCTTT
ATTTGACCTT GCTGGCATCA TGTGTGGACA ATTTGGCATT CCATTTTGGA AATTTTTTCT TGCAACATTG ATTGGAAAGG
CAATTATTAA AACTCACATA CAGACGCTAT TCATCATCTC AGTTTGCAAC AATCAACTTC TTAACTGGAT TGAGAATGAA
TTTATTTGGG TTCTCAGTCA CATACCTGGT TTTGCATCCG TCTTGCCTAG AGTGACTGCC AGTCTCCATG CGATGAAAGA
TAAGTATTTG AAAGCTCCCA ATCCAGCTTC CCCAAATAAG CAGGGGAAAA AGTGGGATTT TTCTTTTTCT TCAGTCTGGA
ACACTATCGT GTGGCTCATG CTTATGAACT TCTTTGTTAA GATAGTGAAT GCAACTGCCC AGAATCATCT GAAGAAACAG
CAGGAGAAAC ATATTTCTGA ATTAACGGAA AAGTCTACCC CAACAGACTC AGGCGTACAA TGA

>Vigan.10G242200.01
MGSGNIVSSS SGRPDLSISE LREKYELELE NLTLTAQPFK TLKFFTLAVI QCIKKTTLYL LAKGGWVMLF SVAVGIFGIV
LMTLGGLQEK HLEELLEYFR FGLWWVALGV ASSIGLGSGL HTFVLYLGPH IALFTIKAVQ CGRVDLKSAP YDTIQLKRGP
SWLDKDCSEF GPPLFQSVYG SQVPLSSILP QVQLEAILWG MGTAIGELPP YFISRAASLS GSRVDAIEEL DSDDKGVLNR
IKCWFLSHSQ HLNFVTILIL ASVPNPLFDL AGIMCGQFGI PFWKFFLATL IGKAIIKTHI QTLFIISVCN NQLLNWIENE
FIWVLSHIPG FASVLPRVTA SLHAMKDKYL KAPNPASPNK QGKKWDFSFS SVWNTIVWLM LMNFFVKIVN ATAQNHLKKQ
QEKHISELTE KSTPTDSGVQ *