GBrowse Details

Vigan.11G004000.01

Basic Information:
Name: Vigan.11G004000.01
Multiple alignment
Variant Information
Position: Chr11:464494..466615 (+ strand)
Length: 2122
Functional Information:
Description: Similar to Uncharacterized protein. [I1K1P2, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Cellular Component: large ribosomal subunit (GO:0015934)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L22/L17 (IPR001063)
Ribosomal protein L22, bacterial/chloroplast-type (IPR005727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.22,54.27,54.04,130.71,19.85,38.23,14.00,26.32
Arabidopsis thaliana homolog: ATCG00810.1
Structure :
Position: Chr11:464494..464633 (+ strand)
Length: 140
Type: five_prime_UTR
Position: Chr11:464634..464871 (+ strand)
Length: 238
Type: CDS
Position: Chr11:465874..466259 (+ strand)
Length: 386
Type: CDS
Position: Chr11:466260..466615 (+ strand)
Length: 356
Type: three_prime_UTR


>Vigan.11G004000.01
AAAGAAAATA AATAATTAAT TAGCTAAATA TTAATTTTGA AAAAGAACCG AATTGAAACC CCTCTCTCCC CTTTATCTTA
TCCATCTCAT TCTCACTCCT TGGTTTGCAG AGCAGGGGTA AGTAACATAG CATAACAGAC ATGGCTGTTT CTCTGTCGGT
GAACCGTCCT CTCCTTCGTC TTCACCACAA GCATCCACCT TTACCTGTGG GCATCGCTCC CCAACTCCAT TTCCACTGTC
AGCCCAAGCT CGCCGGAATT CGATGCTCCT CCTCGCCCTC CCATTTTACC GACAAAACCC TCATTTCCAT CAAACCTAAC
ACTTCCCACA TCAATGACAA CCCCCTCGCT TGTCGCTTCC ACGCTTCCCA GTTTGGAGGA CAGGAGAGCA GCAAATCCGT
GGAAGCGTAC GCTGTTGGGC GAAACATTCG CATGTCCGCT AATAAAGCTC GAAGAGTGAT CGATCAGATT CGTGGACGAA
AATACGATGA AACACTTATG ATATTAGAAC TCATGCCTTA TCGAGCCTGT GAAGCCATTC TGAAGATAGT GTTTTCTGCT
GGAGCAAATG CTACCAATAA CCTGGGTTTA AGCAAGGGAA GTTTAGTTAT CAGTAAAGCA GAGGTTAATG AAGGAAGAAC
AATGAAAAGG GTAAAACCTG TGGCTCGAGG GCGTGCTCAT CCAATTAAAA AGCGCACTTG TCATATAACC GTCACTGTAA
AAGGCTCACC AAGTGAGTCC ATCGTGGAAG CGAGCCCTGC ATAATCCTTT TCGGACTAAG TGTATGTACG CCTTATGATG
AGTTAGTTCC CTTTACCCAT TGTATTTGAT CAAAATTTCT GTATTTCGAC ATTATGTACT TCATTTATAC CGTGTGACTT
GACTTGTAGA GGAGTGATGA ACATGCTTAA ATATTCAATT TAATTAGTCC TGAAAATGAA TGGTTTTGTA TTGCAATTTG
AAAAAAATAA ATAAATTTGA CATTGCTAAT ACTTACCAAA AATAAGTAAT GTAGATTCAG CATCCAGCAC TAAGCAAACA
ATTCTGAGTT ACTAAAGTTA GTTCCTTCTA TTGGTAATGT ATTACGTAGT ACATGTCTGA TATCACGGTG GATATGAAAG


>Vigan.11G004000.01
ATGGCTGTTT CTCTGTCGGT GAACCGTCCT CTCCTTCGTC TTCACCACAA GCATCCACCT TTACCTGTGG GCATCGCTCC
CCAACTCCAT TTCCACTGTC AGCCCAAGCT CGCCGGAATT CGATGCTCCT CCTCGCCCTC CCATTTTACC GACAAAACCC
TCATTTCCAT CAAACCTAAC ACTTCCCACA TCAATGACAA CCCCCTCGCT TGTCGCTTCC ACGCTTCCCA GTTTGGAGGA
CAGGAGAGCA GCAAATCCGT GGAAGCGTAC GCTGTTGGGC GAAACATTCG CATGTCCGCT AATAAAGCTC GAAGAGTGAT
CGATCAGATT CGTGGACGAA AATACGATGA AACACTTATG ATATTAGAAC TCATGCCTTA TCGAGCCTGT GAAGCCATTC
TGAAGATAGT GTTTTCTGCT GGAGCAAATG CTACCAATAA CCTGGGTTTA AGCAAGGGAA GTTTAGTTAT CAGTAAAGCA
GAGGTTAATG AAGGAAGAAC AATGAAAAGG GTAAAACCTG TGGCTCGAGG GCGTGCTCAT CCAATTAAAA AGCGCACTTG
TCATATAACC GTCACTGTAA AAGGCTCACC AAGTGAGTCC ATCGTGGAAG CGAGCCCTGC ATAA

>Vigan.11G004000.01
MAVSLSVNRP LLRLHHKHPP LPVGIAPQLH FHCQPKLAGI RCSSSPSHFT DKTLISIKPN TSHINDNPLA CRFHASQFGG
QESSKSVEAY AVGRNIRMSA NKARRVIDQI RGRKYDETLM ILELMPYRAC EAILKIVFSA GANATNNLGL SKGSLVISKA
EVNEGRTMKR VKPVARGRAH PIKKRTCHIT VTVKGSPSES IVEASPA*