GBrowse Details

Vigan.11G008100.01

Basic Information:
Name: Vigan.11G008100.01
Multiple alignment
Variant Information
Position: Chr11:859612..862347 (- strand)
Length: 2736
Functional Information:
Description: Similar to Glucuronokinase G. [XP_007031613.1, Theobroma cacao]
GO: Biological Process: metabolic process (GO:0008152)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: kinase activity (GO:0016301)
Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773)
InterPro: GHMP kinase N-terminal domain (IPR006204)
Mevalonate/galactokinase (IPR006206)
Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:390.71,88.25,9.89,38.84,5.77,8.40,14.85,7.40
Arabidopsis thaliana homolog: AT3G01640.1, AT5G14470.1
Automatic updates:
Name: NM_001255225 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glucuronokinase 1-like (LOC100793412), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:859612..859912 (- strand)
Length: 301
Type: three_prime_UTR
Position: Chr11:859913..860159 (- strand)
Length: 247
Type: CDS
Position: Chr11:860596..860756 (- strand)
Length: 161
Type: CDS
Position: Chr11:861093..861209 (- strand)
Length: 117
Type: CDS
Position: Chr11:861591..861779 (- strand)
Length: 189
Type: CDS
Position: Chr11:861851..862000 (- strand)
Length: 150
Type: CDS
Position: Chr11:862080..862286 (- strand)
Length: 207
Type: CDS
Position: Chr11:862287..862347 (- strand)
Length: 61
Type: five_prime_UTR


>Vigan.11G008100.01
AAAAACAGAG AGAAAAAAAC GTTTGAATTG AATTGAAGAT AAGAGGAAGA AGGAGACGGT GATGGTTCGA GAGAGAGAGG
TAATAACGCA CAAGGCTTAT GCCAGGGTGG GGTTACTCGG AAACCCAAGC GACGTCTATT ACGGGAAAAC GATATCGTTT
AGCGTCGCCA ACTTCTACGC CACCGTCACC CTCCGTGCCT CGCCGGAGCT CGTCATCCAA CCCCACCCTG TTCACGATCT
CGTTCATTTC TCGTCGCTCC CGCAATTGGT TACCAGGTTG AACTCCGAGG GCTACTATGG TGGTGTGCGA TTGCTTATGG
CTATTTGCAA AGTGTTCTAC GCCTACTGCA AAGACAACGC TATCGAAATC AGCGACGACA ATTTCACGCT GTCCTACGAC
ACCAATATCC CTCGCCAGGC TGGTCTCTCG GGATCCAGCG GGATTGTGTG TGCGGCGTTG AGCTGTTTGC TGGATTTCTT
CAATGTCAGG GAGCTTGTGA AGGTGGAGAT CAGGCCCAAC CTCGTACTCG CCGCCGAGAA AGAACTCGGG ATTGTCGCTG
GTCTTCAGGA TCGGGTAGCG CAGGTTTACG GTGGACTCGT TTACATGGAC TTCAGCAAAG AAAACATGGA TGAGCTTGGC
CATGGAATTT ACATACCCAT GGATTTGAGT CTCCTTCCTC CTCTCTATCT CATCTATGCG GAAAATCCTA GTGATTCTGG
AAAGGTTCAT AGCAAAGTAC GGGAGAGGTG GCTTGATGGT GATGAGTTCA TTGTATCTTC GATGGAAGAA GTTGCTAATA
TTGCGGAAGA AGGAAAAACT GTGTTAGAAG AAAAGGACTA CCCCAAATTT GCAACTCTCA TGAACCGAAA TTTTGACCTG
AGAAGGTCAA TGTTTGGAGA TGAAGCCTTG GGCGGTCTGA ACATTAAAAT GGTAGAAGTT GCTAGAAAGG TTGGAGCTGC
ATCAAAATTC ACAGGTAGCG GAGGAGCTGT TGTTGCATTT TGTCCTGAAG GGACCTCTCA AGTGAAGCTT CTCCAGGATG
AATGTCAAAA AGAAGGATTG TTGATACAGC CTATTGAACC ATTTCCTTCT CGTCTAAGTG AAATCGAGTT AAAAACCTTA
CAAACAAAAT AATGTAATTT CTATGACTTT ATTTTTATGA TGTTCTGAAC AATGAAGGCT TGACAACCCA ACCCAAGAGC
TGAGGATTGT GTCGATTAAA GCAATTTTTA TATGAGCAAA TTAAAAAAAA AAATGGGTTG GCCAATTATT TATTCTTTTG
TACTACCGTG TGGTTGAGAA GCGACAGCTA CTCATACGAC TAATGTCTTA TCTAGATAAG AGGATTAGAA TGACAGGTAA
GTATGCAGAA AAAGAAAAGC TTAGAAGGTT AGATTGTTTA CATTAAATAA ATAAATCAAT AAATAAATAA AGG

>Vigan.11G008100.01
ATGGTTCGAG AGAGAGAGGT AATAACGCAC AAGGCTTATG CCAGGGTGGG GTTACTCGGA AACCCAAGCG ACGTCTATTA
CGGGAAAACG ATATCGTTTA GCGTCGCCAA CTTCTACGCC ACCGTCACCC TCCGTGCCTC GCCGGAGCTC GTCATCCAAC
CCCACCCTGT TCACGATCTC GTTCATTTCT CGTCGCTCCC GCAATTGGTT ACCAGGTTGA ACTCCGAGGG CTACTATGGT
GGTGTGCGAT TGCTTATGGC TATTTGCAAA GTGTTCTACG CCTACTGCAA AGACAACGCT ATCGAAATCA GCGACGACAA
TTTCACGCTG TCCTACGACA CCAATATCCC TCGCCAGGCT GGTCTCTCGG GATCCAGCGG GATTGTGTGT GCGGCGTTGA
GCTGTTTGCT GGATTTCTTC AATGTCAGGG AGCTTGTGAA GGTGGAGATC AGGCCCAACC TCGTACTCGC CGCCGAGAAA
GAACTCGGGA TTGTCGCTGG TCTTCAGGAT CGGGTAGCGC AGGTTTACGG TGGACTCGTT TACATGGACT TCAGCAAAGA
AAACATGGAT GAGCTTGGCC ATGGAATTTA CATACCCATG GATTTGAGTC TCCTTCCTCC TCTCTATCTC ATCTATGCGG
AAAATCCTAG TGATTCTGGA AAGGTTCATA GCAAAGTACG GGAGAGGTGG CTTGATGGTG ATGAGTTCAT TGTATCTTCG
ATGGAAGAAG TTGCTAATAT TGCGGAAGAA GGAAAAACTG TGTTAGAAGA AAAGGACTAC CCCAAATTTG CAACTCTCAT
GAACCGAAAT TTTGACCTGA GAAGGTCAAT GTTTGGAGAT GAAGCCTTGG GCGGTCTGAA CATTAAAATG GTAGAAGTTG
CTAGAAAGGT TGGAGCTGCA TCAAAATTCA CAGGTAGCGG AGGAGCTGTT GTTGCATTTT GTCCTGAAGG GACCTCTCAA
GTGAAGCTTC TCCAGGATGA ATGTCAAAAA GAAGGATTGT TGATACAGCC TATTGAACCA TTTCCTTCTC GTCTAAGTGA
AATCGAGTTA AAAACCTTAC AAACAAAATA A

>Vigan.11G008100.01
MVREREVITH KAYARVGLLG NPSDVYYGKT ISFSVANFYA TVTLRASPEL VIQPHPVHDL VHFSSLPQLV TRLNSEGYYG
GVRLLMAICK VFYAYCKDNA IEISDDNFTL SYDTNIPRQA GLSGSSGIVC AALSCLLDFF NVRELVKVEI RPNLVLAAEK
ELGIVAGLQD RVAQVYGGLV YMDFSKENMD ELGHGIYIPM DLSLLPPLYL IYAENPSDSG KVHSKVRERW LDGDEFIVSS
MEEVANIAEE GKTVLEEKDY PKFATLMNRN FDLRRSMFGD EALGGLNIKM VEVARKVGAA SKFTGSGGAV VAFCPEGTSQ
VKLLQDECQK EGLLIQPIEP FPSRLSEIEL KTLQTK*