GBrowse Details

Vigan.11G010500.01

Basic Information:
Name: Vigan.11G010500.01
Multiple alignment
Variant Information
Position: Chr11:1052170..1056256 (- strand)
Length: 4087
Functional Information:
Description: Similar to Uncharacterized protein. [I1N727, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:82.92,68.06,21.14,23.65,30.28,39.85,20.35,19.21
Automatic updates:
Name: NM_001255433 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif-containing protein (LOC100793209), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:1052170..1052553 (- strand)
Length: 384
Type: three_prime_UTR
Position: Chr11:1052554..1053072 (- strand)
Length: 519
Type: CDS
Position: Chr11:1054557..1054726 (- strand)
Length: 170
Type: CDS
Position: Chr11:1055267..1055366 (- strand)
Length: 100
Type: CDS
Position: Chr11:1055491..1055654 (- strand)
Length: 164
Type: CDS
Position: Chr11:1055801..1055841 (- strand)
Length: 41
Type: CDS
Position: Chr11:1056051..1056175 (- strand)
Length: 125
Type: CDS
Position: Chr11:1056176..1056256 (- strand)
Length: 81
Type: five_prime_UTR


>Vigan.11G010500.01
ATCTAGGGTT TCTCTTTTTA CTTTTCTCAT TCTCGTTCTC TTTCGCTTTC GCTTTCGCAA GCTCTTCTGA ATTCGCAAGC
TATGGAATCT CCCGGTAACG AGCATGTGGT GGATGCCGCT GACCCCAACG ACGTCGTTAC ACCTTTCTCC CACAGAGAAG
AACCCCACAA TTCCCAACCC CTCACCGGCG ACGGTGCTAG TCCCGGAAAG ATATTTATAG GTGGTTTAGC GAGAGAAACG
ACCATTGCTC AATTTATCAA GCACTTTGGG AAATATGGTG AGATCACGGA TTCGGTCATC ATGAAGGACA GGAAAACTGG
GCAACCTCGC GGATTCGGGT TTATAACGTA CGCCGATCCC TCGGTGGTTG ATAAAGTCAT TGAGGATCCT CACGTCATCA
ATGGAAAACA AGTTGAGATT AAGCGGACGA TACCAAGGGG AGCTGTTGGC TCTAAGGATT TTAGGACAAA GAAAATTTTT
GTAGGTGGAA TTCCTTCAAA TGTGACTGAA GATGAATTCA GAGACTTCTT TACTCGCTAT GGTGAAGTAA AAGATCACCA
AATAATGCGG GACCACTCCA CCAACAGATC TCGTGGCTTT GGGTTTATAA CATTTGATTC TGAAGAAGCA GTTGATGATC
TTCTATCCAT GGGGAACAAA ATTGAATTTG CTGGAGCTCA GGTGGAAATC AAGAAGGCTG AACCAAAGAA GCCAAACTCG
GCACCTCCAT CATCCAAGCG CTACAATGAC TCAAGATCTT CATACGGTGG TGCTGGATAT GGAGATGCCT ATGATGGATT
TGGTGGCAAT TTTGGAGTTG GGGGTGGTTA TAGATCAGGT GGTGCTTATG GTGGCGGTAG GGGTGGTGCT TATGGTGCCT
ATGGAAGTGA ATTTGGTGGT TATGGAGGAT ATGCTGGTGC GATGGGACCA TACAGAGGAG ATCCCTCCCT CGGTTATGCT
GGTCGATATG GTGGAAGCTT TAGTAGAGGG TATGATCTTG GTGGGTATGG TGGACCTAGT GAGAATTATG GGGCATATGG
TGGGGGTGGT GGTTCTTCTG GTGGTGCTGG TGCCGGTGCC TATCAAAGTG GCTATGATGG CAGCCTAGGA GGTGGATATG
GAGGGACTAG TGGGGGTCCC TTCTATGGGA GCAGTAGAGG TGGTTATGGT GCTGGCCGAT ACCATCCTTA TGGAAGATAA
GATTGGATAT CGAGCATTTG TAGTCTAGGA CTAATATGTC TAGCATCAAA GCAAGTTTGT AGTCTGTGTT TGGTTCATCA
GTTAGATTAC ATGTTTTCTT TTCAAAAGAG AATTGCCAAG TATGCTTTCA TTTATCAGCA CACCCATTTC TTGGAAGTCT
AAACAAAATT TTCATTTGAT CCCCCTTTGA AGTCTTTTTT TGTTCATGTA AGCTGCAAAT TGTGCAGATG TTTGTATTCT
CAATGTTATT GTTGCTTTGT ACCATTTCTT ACTACCATCT TTTTTTTATG TTTTCGACTT GATTATACCA TGCTGGTCTA
TTTTTTTATG CATGAAAAAT TTGGGGAGTA CATTGAGTTA GTTGATTTTA TTGTTCAATA TTAC

>Vigan.11G010500.01
ATGGAATCTC CCGGTAACGA GCATGTGGTG GATGCCGCTG ACCCCAACGA CGTCGTTACA CCTTTCTCCC ACAGAGAAGA
ACCCCACAAT TCCCAACCCC TCACCGGCGA CGGTGCTAGT CCCGGAAAGA TATTTATAGG TGGTTTAGCG AGAGAAACGA
CCATTGCTCA ATTTATCAAG CACTTTGGGA AATATGGTGA GATCACGGAT TCGGTCATCA TGAAGGACAG GAAAACTGGG
CAACCTCGCG GATTCGGGTT TATAACGTAC GCCGATCCCT CGGTGGTTGA TAAAGTCATT GAGGATCCTC ACGTCATCAA
TGGAAAACAA GTTGAGATTA AGCGGACGAT ACCAAGGGGA GCTGTTGGCT CTAAGGATTT TAGGACAAAG AAAATTTTTG
TAGGTGGAAT TCCTTCAAAT GTGACTGAAG ATGAATTCAG AGACTTCTTT ACTCGCTATG GTGAAGTAAA AGATCACCAA
ATAATGCGGG ACCACTCCAC CAACAGATCT CGTGGCTTTG GGTTTATAAC ATTTGATTCT GAAGAAGCAG TTGATGATCT
TCTATCCATG GGGAACAAAA TTGAATTTGC TGGAGCTCAG GTGGAAATCA AGAAGGCTGA ACCAAAGAAG CCAAACTCGG
CACCTCCATC ATCCAAGCGC TACAATGACT CAAGATCTTC ATACGGTGGT GCTGGATATG GAGATGCCTA TGATGGATTT
GGTGGCAATT TTGGAGTTGG GGGTGGTTAT AGATCAGGTG GTGCTTATGG TGGCGGTAGG GGTGGTGCTT ATGGTGCCTA
TGGAAGTGAA TTTGGTGGTT ATGGAGGATA TGCTGGTGCG ATGGGACCAT ACAGAGGAGA TCCCTCCCTC GGTTATGCTG
GTCGATATGG TGGAAGCTTT AGTAGAGGGT ATGATCTTGG TGGGTATGGT GGACCTAGTG AGAATTATGG GGCATATGGT
GGGGGTGGTG GTTCTTCTGG TGGTGCTGGT GCCGGTGCCT ATCAAAGTGG CTATGATGGC AGCCTAGGAG GTGGATATGG
AGGGACTAGT GGGGGTCCCT TCTATGGGAG CAGTAGAGGT GGTTATGGTG CTGGCCGATA CCATCCTTAT GGAAGATAA

>Vigan.11G010500.01
MESPGNEHVV DAADPNDVVT PFSHREEPHN SQPLTGDGAS PGKIFIGGLA RETTIAQFIK HFGKYGEITD SVIMKDRKTG
QPRGFGFITY ADPSVVDKVI EDPHVINGKQ VEIKRTIPRG AVGSKDFRTK KIFVGGIPSN VTEDEFRDFF TRYGEVKDHQ
IMRDHSTNRS RGFGFITFDS EEAVDDLLSM GNKIEFAGAQ VEIKKAEPKK PNSAPPSSKR YNDSRSSYGG AGYGDAYDGF
GGNFGVGGGY RSGGAYGGGR GGAYGAYGSE FGGYGGYAGA MGPYRGDPSL GYAGRYGGSF SRGYDLGGYG GPSENYGAYG
GGGGSSGGAG AGAYQSGYDG SLGGGYGGTS GGPFYGSSRG GYGAGRYHPY GR*