GBrowse Details

Vigan.11G011400.01

Basic Information:
Name: Vigan.11G011400.01
Multiple alignment
Variant Information
Position: Chr11:1140441..1142612 (+ strand)
Length: 2172
Functional Information:
Description: Similar to Uncharacterized protein. [M4EDC8, Brassica rapa subsp. pekinensis]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.04,28.36,11.24,11.64,12.28,14.15,10.13,11.11
Arabidopsis thaliana homolog: AT1G14990.2
Automatic updates:
Name: NM_001248389 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306456 (LOC100306456), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:1140441..1140865 (+ strand)
Length: 425
Type: five_prime_UTR
Position: Chr11:1140866..1141066 (+ strand)
Length: 201
Type: CDS
Position: Chr11:1141158..1141274 (+ strand)
Length: 117
Type: CDS
Position: Chr11:1142232..1142282 (+ strand)
Length: 51
Type: CDS
Position: Chr11:1142283..1142612 (+ strand)
Length: 330
Type: three_prime_UTR


>Vigan.11G011400.01
CACCAGTTGC TCTAGGGATA CAAGAATGAT TGACAGACTG CACTTTCTTT CGGTGAGTGG CCGGTGGGGT GGGAGGTTTC
TGCCGTGTAA GAGAGGTTTT CTTTGATTTT TGCAATTCCT GGTTAAATTT ATCTTTTTTA TCCTTCTTGC ACCATTTATG
CTTTTTTACT CTGTATTTTA CGATTTCTGC GTCTTCATTC CTGAACTTGT TATAGACTTC TTTTATGCTG TTCTAGTGAT
TAGATAGGTT ACTTGTTGAA ATCTGTTTGT AGTTTTCTTT GAATTGCTTG TGTGCCATAA GTTAATAGGA ATTTATGCTT
AACCTTTTAG TTGTTTCCCT CTCATGAATA TAATTTTTGA GATCCTTTTT CATATTTGCT AATATAATAA TAATAATAAT
TGTTGTTTAC TTAGAACAAC TCGCCATGAG GATCTATGAA AAGTTAAGAG AGATAGTGAA GATTCAAAAG TTCCGCAGAT
TGGTGTCATA TACTGGGTTT TACTGTTTTG CCACACTCAT AAGCTACGCT TATGTCAACA ATACGACAAG AGCTGGTTAC
TCTAGAGCCG ATCAATTCTA TGCATCATAC CCTGCTGGTA CCGAGCTTTT GACGGACACT ACCAAGTTGT ACAAAGCTGC
TCTTGAAAAC TGCTTTGAAG CTGAAGAGTG GGGTCCGTTT GAGTTCTGCA TCATGGCAAA ACACTTTAAT CGTCAAGGGA
ATTCGCCATA TGCTTATCAT GCGCAATACT TGGCACACCT CCTTTCTCTT GGACAACTTG ATGGAAGTGG TTGATCAGAG
TGATTTACAT ATAAACTATG ATGAAGTATG ACAGTAGAAA CTTTTGCAAT ATATGAAGAC ATGTAAAGAC AAATGAGAAA
ACAATGAGGT TTGAGTACTT ACTGAGATTT GAACTCCCTG TGCATTCTAC AGCACTCTTA GGAATAAGGA ACAAAATATG
TGTAGCATTT TGTCTCTTTC GGGTAGGGTA ACAACAGATA CTCAGCTTTC TTCCTGTTCT TTGATATTCA AACTCAATCA
GTCTCAAATG TTTCTGATTG AGTTGTTTAC AGTACTAATT GTCTAATGCT ATCCTAATTA AGACTATTTT AATAAATGTT
GGCA

>Vigan.11G011400.01
ATGAGGATCT ATGAAAAGTT AAGAGAGATA GTGAAGATTC AAAAGTTCCG CAGATTGGTG TCATATACTG GGTTTTACTG
TTTTGCCACA CTCATAAGCT ACGCTTATGT CAACAATACG ACAAGAGCTG GTTACTCTAG AGCCGATCAA TTCTATGCAT
CATACCCTGC TGGTACCGAG CTTTTGACGG ACACTACCAA GTTGTACAAA GCTGCTCTTG AAAACTGCTT TGAAGCTGAA
GAGTGGGGTC CGTTTGAGTT CTGCATCATG GCAAAACACT TTAATCGTCA AGGGAATTCG CCATATGCTT ATCATGCGCA
ATACTTGGCA CACCTCCTTT CTCTTGGACA ACTTGATGGA AGTGGTTGA

>Vigan.11G011400.01
MRIYEKLREI VKIQKFRRLV SYTGFYCFAT LISYAYVNNT TRAGYSRADQ FYASYPAGTE LLTDTTKLYK AALENCFEAE
EWGPFEFCIM AKHFNRQGNS PYAYHAQYLA HLLSLGQLDG SG*