GBrowse Details

Vigan.11G013800.01

Basic Information:
Name: Vigan.11G013800.01
Multiple alignment
Variant Information
Position: Chr11:1376797..1380854 (+ strand)
Length: 4058
Functional Information:
Description: Similar to Uncharacterized protein. [Q9SWS3, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: polygalacturonase activity (GO:0004650)
InterPro: Glycoside hydrolase, family 28 (IPR000743)
Parallel beta-helix repeat (IPR006626)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.00,0.05,0.00,30.49,0.19,23.12,0.05
Arabidopsis thaliana homolog: AT1G10640.1, AT1G60590.1, AT5G14650.1
Automatic updates:
Name: NM_001251162 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max polygalacturonase PG1 (LOC547542), mRNA.
PubMed ID: 10356800 NCBI(pubmed)
Status: Known Variant
Name: NM_001251175 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max polygalacturonase PG2 (LOC547543), mRNA.
PubMed ID: 10356800 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:1376797..1376865 (+ strand)
Length: 69
Type: five_prime_UTR
Position: Chr11:1376866..1377048 (+ strand)
Length: 183
Type: CDS
Position: Chr11:1377506..1377637 (+ strand)
Length: 132
Type: CDS
Position: Chr11:1377997..1378203 (+ strand)
Length: 207
Type: CDS
Position: Chr11:1378620..1378827 (+ strand)
Length: 208
Type: CDS
Position: Chr11:1379748..1379938 (+ strand)
Length: 191
Type: CDS
Position: Chr11:1380227..1380613 (+ strand)
Length: 387
Type: CDS
Position: Chr11:1380614..1380854 (+ strand)
Length: 241
Type: three_prime_UTR


>Vigan.11G013800.01
AAATCTCTTA TTCTCTTCAA ACCATCTTCT TCACCAACTA ACTTTGCATC TCTGTTTTCT CTTTCGAAAA TGAAGAACAT
GAACACGAAC ATAAAGACCA TTGCATTGAT CGTTGTAATA GCCTTTTCTG TGTTGTCTTC AAGCTGCACT GCCACACGTG
TCAGCCTCGG GAGGAAACTC AAAGCAGCTT CTGCTACTTT TAATGTATTG GACTATGGTG CCAAAGGTGA TGGTCATGCA
GATGATACAA AGGCCTTTGA AGGAGCATGG GAAGCTGCTT GTAAGGTGGA GGGTTCAACA ATGGTTGTTC CATCTGGTTC
TGTATTTTTG GTGAAACCAA TCTCTTTCTC AGGTCCTAAC TGTGAGCCAA ACATTGTTTT TCAGTTAGAT GGAAAAATCA
TTGCACCTAC AAGCTCTGCA GCTTGGGGCT CTGGCACCCT GCAATGGCTT GAATTTACAA AGCTTAGAAA GATCACAATA
AGAGGTAAAG GTGTCATTGA TGGCCAAGGC TCTGTTTGGT GGAATGACTC ACCCACTTCC ACAGAAGTCA TGCTGGAAAG
CAGTGGAAGA CTTCCAAGCA CAAAACCAAC AGCCCTGAGG TTCTATGGAA GCGATGGTGT AACAGTGACA GGAATAACAA
TTCAGAACAG CCAACAGACA CATCTGAAGT TTGATTCAAG CACAAACGTT CAAGTGTTTG ATATAAACGT TTCATCACCT
GGTGATAGCC CCAACACTGA TGGAATTCAT CTGCAGAACT CACAGAATGT GGTCATCTAC AGCAGCACAC TTGCTTGTGG
TGATGACTGC ATATCGATTC AAACTGGTTG CTCAGACGTA TATGTTCATA ACGTGAATTG TGGACCTGGC CATGGAATCA
GTATTGGAAG TCTTGGCAAA GAGAACACCA AAGCCTGTGT TAGAAACATC ACTGTTCGAG ATGTCACAAT CAAGAACACC
CTCACTGGTG TTAGAATCAA AACATGGCAG GGAGGCTCCG GCTCGGTCCA AAACATAATG TTCTCAAACG TGCAAGTTTC
TGGAGTTGAA ACTCCCATCT CCATCGATCA ATACTATTGT GATGGTGGAA AATGCGGGAA TGAGTCATCA GCAGTGGCAG
TGTCAGGCAT ACAGTATGTG AACATAAAAG GAACATACAC AAAAGAGCCA ATTTATTTTG CATGCAGTGA TAGCTTACCA
TGCACTGGCA TAACCCTTGA CACCATTCAG CTACAATCAT CTCAAAACCC TAACAATGTA CCCTTTTGTT GGGAAGCATT
TGGAGAATTG AAGACCAAAA CAGTCCCTCC TGTTGAATGT CTTCAGAGTG GAAACCCTTC AAAATCAGGA TTTGCTTCCA
ACATTGATTC TTGCTGATCA TTTATCACCA CTATACTATG TTAGGGTTAC ATAGATCAAT ATAATACATC ATAGAAAGTT
GTTCTTAGTG GTTGCTTATC ATGATATATA TGTTAATAGT AGTTCATATA TTCTTGTATT ATATGTAATT TGGGTGAGGA
TTTAGAAGCC TATATATATA CATTTAGATT GAAAGGTTTA TGATGTAGAA AAAATGTGTT TAGCCACATA TCTATGAATT
ATATAATAAA TTTTCACA

>Vigan.11G013800.01
ATGAAGAACA TGAACACGAA CATAAAGACC ATTGCATTGA TCGTTGTAAT AGCCTTTTCT GTGTTGTCTT CAAGCTGCAC
TGCCACACGT GTCAGCCTCG GGAGGAAACT CAAAGCAGCT TCTGCTACTT TTAATGTATT GGACTATGGT GCCAAAGGTG
ATGGTCATGC AGATGATACA AAGGCCTTTG AAGGAGCATG GGAAGCTGCT TGTAAGGTGG AGGGTTCAAC AATGGTTGTT
CCATCTGGTT CTGTATTTTT GGTGAAACCA ATCTCTTTCT CAGGTCCTAA CTGTGAGCCA AACATTGTTT TTCAGTTAGA
TGGAAAAATC ATTGCACCTA CAAGCTCTGC AGCTTGGGGC TCTGGCACCC TGCAATGGCT TGAATTTACA AAGCTTAGAA
AGATCACAAT AAGAGGTAAA GGTGTCATTG ATGGCCAAGG CTCTGTTTGG TGGAATGACT CACCCACTTC CACAGAAGTC
ATGCTGGAAA GCAGTGGAAG ACTTCCAAGC ACAAAACCAA CAGCCCTGAG GTTCTATGGA AGCGATGGTG TAACAGTGAC
AGGAATAACA ATTCAGAACA GCCAACAGAC ACATCTGAAG TTTGATTCAA GCACAAACGT TCAAGTGTTT GATATAAACG
TTTCATCACC TGGTGATAGC CCCAACACTG ATGGAATTCA TCTGCAGAAC TCACAGAATG TGGTCATCTA CAGCAGCACA
CTTGCTTGTG GTGATGACTG CATATCGATT CAAACTGGTT GCTCAGACGT ATATGTTCAT AACGTGAATT GTGGACCTGG
CCATGGAATC AGTATTGGAA GTCTTGGCAA AGAGAACACC AAAGCCTGTG TTAGAAACAT CACTGTTCGA GATGTCACAA
TCAAGAACAC CCTCACTGGT GTTAGAATCA AAACATGGCA GGGAGGCTCC GGCTCGGTCC AAAACATAAT GTTCTCAAAC
GTGCAAGTTT CTGGAGTTGA AACTCCCATC TCCATCGATC AATACTATTG TGATGGTGGA AAATGCGGGA ATGAGTCATC
AGCAGTGGCA GTGTCAGGCA TACAGTATGT GAACATAAAA GGAACATACA CAAAAGAGCC AATTTATTTT GCATGCAGTG
ATAGCTTACC ATGCACTGGC ATAACCCTTG ACACCATTCA GCTACAATCA TCTCAAAACC CTAACAATGT ACCCTTTTGT
TGGGAAGCAT TTGGAGAATT GAAGACCAAA ACAGTCCCTC CTGTTGAATG TCTTCAGAGT GGAAACCCTT CAAAATCAGG
ATTTGCTTCC AACATTGATT CTTGCTGA

>Vigan.11G013800.01
MKNMNTNIKT IALIVVIAFS VLSSSCTATR VSLGRKLKAA SATFNVLDYG AKGDGHADDT KAFEGAWEAA CKVEGSTMVV
PSGSVFLVKP ISFSGPNCEP NIVFQLDGKI IAPTSSAAWG SGTLQWLEFT KLRKITIRGK GVIDGQGSVW WNDSPTSTEV
MLESSGRLPS TKPTALRFYG SDGVTVTGIT IQNSQQTHLK FDSSTNVQVF DINVSSPGDS PNTDGIHLQN SQNVVIYSST
LACGDDCISI QTGCSDVYVH NVNCGPGHGI SIGSLGKENT KACVRNITVR DVTIKNTLTG VRIKTWQGGS GSVQNIMFSN
VQVSGVETPI SIDQYYCDGG KCGNESSAVA VSGIQYVNIK GTYTKEPIYF ACSDSLPCTG ITLDTIQLQS SQNPNNVPFC
WEAFGELKTK TVPPVECLQS GNPSKSGFAS NIDSC*