GBrowse Details

Vigan.11G016600.01

Basic Information:
Name: Vigan.11G016600.01
Multiple alignment
Variant Information
Position: Chr11:1635208..1639886 (+ strand)
Length: 4679
Functional Information:
Description: Similar to Carbonic anhydrase. [H9CXY5, Vigna unguiculata]
GO: Biological Process: carbon utilization (GO:0015976)
Molecular Function: carbonate dehydratase activity (GO:0004089)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Carbonic anhydrase (IPR001765)
Carbonic anhydrase, prokaryotic-like, conserved site (IPR015892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.85,0.52,10.76,3236.13,0.51,14.58,5.86,72.77
Arabidopsis thaliana homolog: AT3G01500.2
Automatic updates:
Name: NM_001317298 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata carbonic anhydrase, chloroplastic (LOC106771342), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354786 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbonic anhydrase, chloroplastic (LOC100500448), transcript variant 1, mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001360396 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbonic anhydrase, chloroplastic (LOC100781868), transcript variant 1, mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:1635208..1635640 (+ strand)
Length: 433
Type: five_prime_UTR
Position: Chr11:1635641..1635841 (+ strand)
Length: 201
Type: CDS
Position: Chr11:1636998..1637056 (+ strand)
Length: 59
Type: CDS
Position: Chr11:1637165..1637314 (+ strand)
Length: 150
Type: CDS
Position: Chr11:1637408..1637456 (+ strand)
Length: 49
Type: CDS
Position: Chr11:1637733..1637849 (+ strand)
Length: 117
Type: CDS
Position: Chr11:1638122..1638175 (+ strand)
Length: 54
Type: CDS
Position: Chr11:1638313..1638398 (+ strand)
Length: 86
Type: CDS
Position: Chr11:1638619..1638724 (+ strand)
Length: 106
Type: CDS
Position: Chr11:1639155..1639319 (+ strand)
Length: 165
Type: CDS
Position: Chr11:1639320..1639886 (+ strand)
Length: 567
Type: three_prime_UTR


>Vigan.11G016600.01
CTTTCTTTTT CATTTTATCT CATAAATGCA GACCCTCATA AGAATTAACG TGAATCTCAT AGATAATATC TACAAACAAT
GTTATGGTCC ATAGCTGACA AAGTGCTAAT CAAGCACCTC ATGATCAGAA GTCAAGAAAA CCAATTTTAA TTAGTGCACA
CCGAAAATCT ATGGCCATTT TGTGTGTTTG TGAAGGTGAA TGGCAAAAGG GGTGTGTGTG ATCCAAAGTG AGAAAGGGTT
ATGGTCATTC TCTCACAGTT AATCTCCAAC ATTCAAACCT CATCTACAAG GATAGGAATG AAGCTCTCAT TTGTTTGGCT
TTCGTTTTCA TTATCTGCCA AAGGTCACAT AAAATGGGGA TACCCTATTG ACATGCCACA CCAGATTGCA TCAAAGGGCT
ATATAGCATA AAGTTTTGAG TCCTCATTGC ACCATGTCGT CCTCTTCCAT AAACGGTTGG TGCCTCTCTT CAATCTCCCC
AGCCAAAACC TCTCTTAAGA AGGCCACATT ACGACCTTCT GTCTTTGCAA CCCTCACCAC TCCTTCTTCT CCTTCGTCTT
CCTCTTCTTT CCCTTCTCTC ATTCAAGACA AGCCTGTCTT TGCTGCACCT TCCCACATCA TCACCCCAAC TGTGAGAGAG
GATATGGCAA AGGACTATGA GCAAGCTATT GAAGAACTCC AGAAATTGTT GAGGGAGAAG ACTGAACTGA AGGCCACAGC
AGCTGAAAAA GTGGAGCAGA TAACAGCTTC ACTGGGGACA TCATCATCTG ATACCATCCC GTCATCAGAA GCCTCTGACA
GGATCAAATC TGGTTTCCTT TACTTCAAGA AGGAGAAATA TGACAAGAAC CCAGCTTTGT ATGGTGAACT TGCCAAAGGC
CAGAGCCCCA AGTTTATGGT GTTTGCTTGC TCAGACTCAA GAGTTTGCCC CTCCCATGTG CTAGATTTCC AACCTGGAGA
GGCTTTTGTG GTCAGAAATG TTGCTAACAT TGTCCCACCA TATGACCAGT CAAAATACTC TGGAACTGGG GCAGCCATTG
AGTATGCTGT TTTGCATCTC AAGGTGTCCA ACATTGTGGT CATTGGACAC AGTGCTTGTG GTGGTATCAA GGGGCTTTTA
TCTTTCCCTT TTGATGGAAC CTACTCTACT GATTTTATTG AGGAGTGGGT CAAAGTTGGC TTACCTGCAA AGGCAAAGGT
GAAGACACAG CATGGGGATG CACCTTTTGC TGAGTTGTGC ACACACTGTG AGAAGGAAGC TGTTAATGTT TCCCTTGGAA
ACCTGCTAAC CTACCCATTT GTGAGAGATG GCTTGGTGAA CAAAACATTG GCTCTGAAAG GAGGATACTA TGACTTTGTT
AAGGGATCTT TTGAGCTCTG GAGCCTTAAC TTTGGCCTTG CATCCTCTTT CTCCGTATGA ACATCAACCA TTATCAATGA
CCTCATCTTG GTTCCCTAAG TATTCTCCTA TCTAAAATGT ACTCTGTAAT TGCCCTTGTT ATATATAACG TGCATGTGCT
GAATTTCCTA ATAAAAGCTG CATTGAGATT ATCCATAGAT CACTCTCTCT CTCTCTCTCT CTCTCTCTCC TTCTCTCTCC
AAATTGAAGT TCTTCAAGTA AGAAAAATGT AATGTTTTAT GGTCTTTCAC CACTGCATTT TTCTTCTTTG TTAGGTTAAA
GATGTGGCCA CCATTCTGCA TTGGAAGCTA TAGGCCATGC TTAGAGGTCG TGTGTCTGCA ATGAAGAGGC CTAGCCACCT
TTATCATATG ATATTTTATA AATATATATA TGAAACTATG AACTGCGTTT ATGCATGTCG GAAAATCTTC TTTTAATAGG
AGTTGGAAAT CCTCTTATGT AACAAAATCT TCTTTGTTCA ACCTTCATCT TTCTATATGC ACAAAATCAT GAGAGGTGAG
AGAAATCAAT CTTAGTTAAT TACACTATTC TCTCTGTTAT AAAATAACTT CAGTTTAAAG TTTTTAA

>Vigan.11G016600.01
ATGTCGTCCT CTTCCATAAA CGGTTGGTGC CTCTCTTCAA TCTCCCCAGC CAAAACCTCT CTTAAGAAGG CCACATTACG
ACCTTCTGTC TTTGCAACCC TCACCACTCC TTCTTCTCCT TCGTCTTCCT CTTCTTTCCC TTCTCTCATT CAAGACAAGC
CTGTCTTTGC TGCACCTTCC CACATCATCA CCCCAACTGT GAGAGAGGAT ATGGCAAAGG ACTATGAGCA AGCTATTGAA
GAACTCCAGA AATTGTTGAG GGAGAAGACT GAACTGAAGG CCACAGCAGC TGAAAAAGTG GAGCAGATAA CAGCTTCACT
GGGGACATCA TCATCTGATA CCATCCCGTC ATCAGAAGCC TCTGACAGGA TCAAATCTGG TTTCCTTTAC TTCAAGAAGG
AGAAATATGA CAAGAACCCA GCTTTGTATG GTGAACTTGC CAAAGGCCAG AGCCCCAAGT TTATGGTGTT TGCTTGCTCA
GACTCAAGAG TTTGCCCCTC CCATGTGCTA GATTTCCAAC CTGGAGAGGC TTTTGTGGTC AGAAATGTTG CTAACATTGT
CCCACCATAT GACCAGTCAA AATACTCTGG AACTGGGGCA GCCATTGAGT ATGCTGTTTT GCATCTCAAG GTGTCCAACA
TTGTGGTCAT TGGACACAGT GCTTGTGGTG GTATCAAGGG GCTTTTATCT TTCCCTTTTG ATGGAACCTA CTCTACTGAT
TTTATTGAGG AGTGGGTCAA AGTTGGCTTA CCTGCAAAGG CAAAGGTGAA GACACAGCAT GGGGATGCAC CTTTTGCTGA
GTTGTGCACA CACTGTGAGA AGGAAGCTGT TAATGTTTCC CTTGGAAACC TGCTAACCTA CCCATTTGTG AGAGATGGCT
TGGTGAACAA AACATTGGCT CTGAAAGGAG GATACTATGA CTTTGTTAAG GGATCTTTTG AGCTCTGGAG CCTTAACTTT
GGCCTTGCAT CCTCTTTCTC CGTATGA

>Vigan.11G016600.01
MSSSSINGWC LSSISPAKTS LKKATLRPSV FATLTTPSSP SSSSSFPSLI QDKPVFAAPS HIITPTVRED MAKDYEQAIE
ELQKLLREKT ELKATAAEKV EQITASLGTS SSDTIPSSEA SDRIKSGFLY FKKEKYDKNP ALYGELAKGQ SPKFMVFACS
DSRVCPSHVL DFQPGEAFVV RNVANIVPPY DQSKYSGTGA AIEYAVLHLK VSNIVVIGHS ACGGIKGLLS FPFDGTYSTD
FIEEWVKVGL PAKAKVKTQH GDAPFAELCT HCEKEAVNVS LGNLLTYPFV RDGLVNKTLA LKGGYYDFVK GSFELWSLNF
GLASSFSV*