VIGGS:GBrowse

Vigan.11G016700.01

Basic Information:

Name:	Vigan.11G016700.01 Multiple alignment Variant Information
Position:	Chr11:1642203..1647574 (- strand)
Length:	5372

Functional Information:

Description:	Similar to Serine-type peptidase. [D2DWB6, Phaseolus vulgaris]
GO:	Biological Process: proteolysis (GO:0006508)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: serine-type endopeptidase activity (GO:0004252)
	Molecular Function: protein binding (GO:0005515)
InterPro:	PDZ domain (IPR001478)
	Peptidase S1C (IPR001940)
	Trypsin-like cysteine/serine peptidase domain (IPR009003)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:20.20,5.19,20.68,130.02,7.31,20.60,10.34,26.24
Arabidopsis thaliana homolog:	AT3G27925.1

Automatic updates:

Name:	NM_001255763 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protease Do-like 1, chloroplastic-like (LOC100783304), transcript variant 1, mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:1642203..1642418 (- strand)
Length:	216
Type:	three_prime_UTR

Position:	Chr11:1642419..1642496 (- strand)
Length:	78
Type:	CDS

Position:	Chr11:1643648..1643782 (- strand)
Length:	135
Type:	CDS

Position:	Chr11:1644046..1644198 (- strand)
Length:	153
Type:	CDS

Position:	Chr11:1644326..1644524 (- strand)
Length:	199
Type:	CDS

Position:	Chr11:1644909..1644946 (- strand)
Length:	38
Type:	CDS

Position:	Chr11:1645443..1645614 (- strand)
Length:	172
Type:	CDS

Position:	Chr11:1646871..1646993 (- strand)
Length:	123
Type:	CDS

Position:	Chr11:1647100..1647476 (- strand)
Length:	377
Type:	CDS

Position:	Chr11:1647477..1647574 (- strand)
Length:	98
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G016700.01
ACCGAAGCTC CTTCACACGT TGACAACACT AGAGCAGACC CAAACTGATC CAACCATTTA GCATAAACAG AGACCATTCC
TCTGTCCAAG CAAAAACCAT GGCCACTTGT TCACTCATTT CCACACGCTT CCATTCTCCT TCTTCTTCAC TCTTTCGTTC
TTCAACCATC AAACCCACCA CAACAATTCA CCTTTCCAAA ACCCTTCATC TTCACACTCC CAACCTTTTC CTCCTTCGCC
TCCCATCACC AAAACTCACA ATACCCCTTT TACCCAAACT CTCCATTCCC AAACCTCTTC TCCTTCTCTG CACTTCCCTC
GCCCTCTCCT TCACTCTCCT CGTTTCCAAC GCCGACTCCG CCGCCGCCTT CGTCGTCACC TCGCCGCGGA AGCTCCAGTC
CGACGAACTC GCCACCGTTC GCCTCTTCCA AGAGAACACT CCCTCTGTTG TCTACATAAC CAACCTTGCT GTCAAGCAGG
ATGCATTCAC GCTGGACGTC TTGGAGGTTC CCCAGGGATC CGGGTCTGGC TTTGTTTGGG ATAAGGATGG TCATATTGTG
ACCAATTATC ACGTTATTCG TGGTGCCTCT GATCTCAAGG TCACTCTAGC TGACCAGTCA ACTTATGATG CCAAAGTTGT
TGGTTTTGAC CAAGACAAGG ATGTTGCTGT GCTGCGTGTC GAGGCACCAA GTGACAAGCT CAGGCCTATA CCTATTGGGG
TCTCTGCTGA CTTGCTTGTT GGTCAGAAGG TTTATGCCAT TGGGAACCCG TTTGGACTAG ATCACACACT CACAACAGGG
GTCATCAGTG GTCTTAGGCG AGAAATTAGT TCTGCTGCAA CCGGTCGTCC AATTCAAGAT GTTATTCAGA CAGATGCAGC
AATTAATCCT GGTAACAGCG GAGGGCCTCT CTTAGATAGT TCTGGAAACC TCATTGGGAT AAATACAGCC ATATATTCTC
CATCTGGCGC ATCCTCTGGT GTTGGATTTT CTATTCCAGT GGACACTGTA AATGGTATTG TTGACCAATT GGTGAAGTTT
GGGAAGGTTA CAAGACCTAT TTTAGGGATT AAGTTTGCTC CAGATCAGTC TGTGGAGCAG TTGGGTGTAA GTGGAGTGCT
TGTGTTAGAT GCTCCTGCCA ATGGTCCTGC TGGGAAAGCA GGCCTGCAAT CAACAAAGCG TGACTCGTAT GGTAGACTCA
TTTTAGGTGA CATCATAACG TCTGTGAATG ACAAGAAGGT TACTAATGGA AGTGATTTGT ACAGAATTCT TGACCAGTGT
AAAGTAGGTG AAAAGGTGAT TGTTGAGGTT TTGAGAGGTG ATCACAAGGA GAAGATCCCT GTCATTCTGG AGCCAAAACC
TGATGAATCA TGATCACAAG GATTATGTAT ATATACAATT CACATGCGAT TACCAGAGAG TGAATGAAGC TGTTTTATGG
GTATTCTTTA GTTGTTGTAT CTTGCTTCAT AAACAGCTCC AATTGTACAT ATATATATAT ATATACATAC TATGGAACTG
AAAGCTCATC ATCCTTTAAC TTTTTCACTC TTAAACATAA TATAATTTGG CAGTTCTATT TTGCCCCCA

[show][hide][copy]CDS

>Vigan.11G016700.01
ATGGCCACTT GTTCACTCAT TTCCACACGC TTCCATTCTC CTTCTTCTTC ACTCTTTCGT TCTTCAACCA TCAAACCCAC
CACAACAATT CACCTTTCCA AAACCCTTCA TCTTCACACT CCCAACCTTT TCCTCCTTCG CCTCCCATCA CCAAAACTCA
CAATACCCCT TTTACCCAAA CTCTCCATTC CCAAACCTCT TCTCCTTCTC TGCACTTCCC TCGCCCTCTC CTTCACTCTC
CTCGTTTCCA ACGCCGACTC CGCCGCCGCC TTCGTCGTCA CCTCGCCGCG GAAGCTCCAG TCCGACGAAC TCGCCACCGT
TCGCCTCTTC CAAGAGAACA CTCCCTCTGT TGTCTACATA ACCAACCTTG CTGTCAAGCA GGATGCATTC ACGCTGGACG
TCTTGGAGGT TCCCCAGGGA TCCGGGTCTG GCTTTGTTTG GGATAAGGAT GGTCATATTG TGACCAATTA TCACGTTATT
CGTGGTGCCT CTGATCTCAA GGTCACTCTA GCTGACCAGT CAACTTATGA TGCCAAAGTT GTTGGTTTTG ACCAAGACAA
GGATGTTGCT GTGCTGCGTG TCGAGGCACC AAGTGACAAG CTCAGGCCTA TACCTATTGG GGTCTCTGCT GACTTGCTTG
TTGGTCAGAA GGTTTATGCC ATTGGGAACC CGTTTGGACT AGATCACACA CTCACAACAG GGGTCATCAG TGGTCTTAGG
CGAGAAATTA GTTCTGCTGC AACCGGTCGT CCAATTCAAG ATGTTATTCA GACAGATGCA GCAATTAATC CTGGTAACAG
CGGAGGGCCT CTCTTAGATA GTTCTGGAAA CCTCATTGGG ATAAATACAG CCATATATTC TCCATCTGGC GCATCCTCTG
GTGTTGGATT TTCTATTCCA GTGGACACTG TAAATGGTAT TGTTGACCAA TTGGTGAAGT TTGGGAAGGT TACAAGACCT
ATTTTAGGGA TTAAGTTTGC TCCAGATCAG TCTGTGGAGC AGTTGGGTGT AAGTGGAGTG CTTGTGTTAG ATGCTCCTGC
CAATGGTCCT GCTGGGAAAG CAGGCCTGCA ATCAACAAAG CGTGACTCGT ATGGTAGACT CATTTTAGGT GACATCATAA
CGTCTGTGAA TGACAAGAAG GTTACTAATG GAAGTGATTT GTACAGAATT CTTGACCAGT GTAAAGTAGG TGAAAAGGTG
ATTGTTGAGG TTTTGAGAGG TGATCACAAG GAGAAGATCC CTGTCATTCT GGAGCCAAAA CCTGATGAAT CATGA

[show][hide][copy]PROTEIN

>Vigan.11G016700.01
MATCSLISTR FHSPSSSLFR SSTIKPTTTI HLSKTLHLHT PNLFLLRLPS PKLTIPLLPK LSIPKPLLLL CTSLALSFTL
LVSNADSAAA FVVTSPRKLQ SDELATVRLF QENTPSVVYI TNLAVKQDAF TLDVLEVPQG SGSGFVWDKD GHIVTNYHVI
RGASDLKVTL ADQSTYDAKV VGFDQDKDVA VLRVEAPSDK LRPIPIGVSA DLLVGQKVYA IGNPFGLDHT LTTGVISGLR
REISSAATGR PIQDVIQTDA AINPGNSGGP LLDSSGNLIG INTAIYSPSG ASSGVGFSIP VDTVNGIVDQ LVKFGKVTRP
ILGIKFAPDQ SVEQLGVSGV LVLDAPANGP AGKAGLQSTK RDSYGRLILG DIITSVNDKK VTNGSDLYRI LDQCKVGEKV
IVEVLRGDHK EKIPVILEPK PDES*