GBrowse Details

Vigan.11G020200.01

Basic Information:
Name: Vigan.11G020200.01
Multiple alignment
Variant Information
Position: Chr11:1988656..1991649 (- strand)
Length: 2994
Functional Information:
Description: Similar to Uncharacterized protein. [I1N5T4, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: SWEET sugar transporter (IPR004316)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.10,8.69,143.81,1.42,0.00,12.86,0.09,0.99
Automatic updates:
Name: NM_001370952 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sugar efflux transporter SWEET33 (SWEET33), mRNA.
PubMed ID: 26162601 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:1988656..1988906 (- strand)
Length: 251
Type: three_prime_UTR
Position: Chr11:1988907..1989062 (- strand)
Length: 156
Type: CDS
Position: Chr11:1989852..1989974 (- strand)
Length: 123
Type: CDS
Position: Chr11:1990072..1990233 (- strand)
Length: 162
Type: CDS
Position: Chr11:1990737..1990953 (- strand)
Length: 217
Type: CDS
Position: Chr11:1991162..1991198 (- strand)
Length: 37
Type: CDS
Position: Chr11:1991441..1991483 (- strand)
Length: 43
Type: CDS
Position: Chr11:1991484..1991649 (- strand)
Length: 166
Type: five_prime_UTR


>Vigan.11G020200.01
TAAAAAGAAG CTTCTAGTAG GTAAGTATAT GTAGCTGTCT CTGGCTGGTA CCGGTTCCCA ACCTCATGCA TTCTCCTTTT
CTCTTTCTCT TTCTCACTCT CTCTTCCATT CTGTGATTTT CTGTTGCATT ATTAATTCTT TCTGCAGAAA AGAAAAAAAC
CTGAGAATGG TGAACCCTGC AATTGCTCGT AACGTCGTCG GCATAATAGG CAATGTCATC TCCTTTGGCC TGTTCTTCTC
ACCTGCACCA ACTTTCTATG GAATAGTGAA GAAGAAGAGC GTGGAAGAGT TCAAGCCTGA TCCTTACTTA GCAACGGTTC
TGAATTGTGC TTTTTGGGTG TTCTATGGAA TGCCTTTTGT GCATCCAAAC AGCATTTTAG TTCTCACCAT CAATAGTGTT
GGGCTTGTGT TCGAATTTTT CTATCTTACC ATATATTATA TCTACGCCAC CAACAAAGGA CGGAAGAAGG TACTGATTTT
CCTTCTCATC GAGCTTATTT TCTTTGCTGC GGTTGCTCTT GTAACAATGC TGGCACTGCA TGGCACAAAG AAAAGGTCAT
TAGTGGTTGG TATTCTGTCT GATATCTTCA ATGTTATGAT GTATGTCTCT CCTCTTACAG TTATGGCAAA GGTTATAAAA
ACTAAGAGTG TGAAATACAT GCCATTTTGG CTTTCTGTGG CTAACTTCCT TAATGGTCTG TGTTGGACAA CATATGCTCT
CATCCACCCC TTTGACCTTT ATGTGCTGAT CAGCAACGGT ATTGGAGCAA TCTCCGGACT AGTTCAGCTC CTGTTATATG
CATGTTACTG TTCCTGCAAG AGTGAAAAAG ATGACGATGG TGATCATGAT TTGAAACCAG CTGGGGTTCA GCTCTCCAAC
ATAAATGGAA CAGTGGCTGT GTGATTACAC ATCAATATGG AGTCATAACT TTTTTTTCTC TTTTATTTTC TGTTTACTCC
TTCTTCACCT TATACTTCTT TCTGCCTCTT GAGTTTCAAA TGCAACAAAG AGATTTATAT GTGGACATAT AGAATGGTTG
CTTTTATAAT ACATATGCAT GCTTAATGCT AAGATTTACT TTGGATTTTA TTTTCAAGTT TTGTATGTCA ATTGTGTAAA
TACTTCATTA AACAATCGAA ATCAATTAAT TTGGC

>Vigan.11G020200.01
ATGGTGAACC CTGCAATTGC TCGTAACGTC GTCGGCATAA TAGGCAATGT CATCTCCTTT GGCCTGTTCT TCTCACCTGC
ACCAACTTTC TATGGAATAG TGAAGAAGAA GAGCGTGGAA GAGTTCAAGC CTGATCCTTA CTTAGCAACG GTTCTGAATT
GTGCTTTTTG GGTGTTCTAT GGAATGCCTT TTGTGCATCC AAACAGCATT TTAGTTCTCA CCATCAATAG TGTTGGGCTT
GTGTTCGAAT TTTTCTATCT TACCATATAT TATATCTACG CCACCAACAA AGGACGGAAG AAGGTACTGA TTTTCCTTCT
CATCGAGCTT ATTTTCTTTG CTGCGGTTGC TCTTGTAACA ATGCTGGCAC TGCATGGCAC AAAGAAAAGG TCATTAGTGG
TTGGTATTCT GTCTGATATC TTCAATGTTA TGATGTATGT CTCTCCTCTT ACAGTTATGG CAAAGGTTAT AAAAACTAAG
AGTGTGAAAT ACATGCCATT TTGGCTTTCT GTGGCTAACT TCCTTAATGG TCTGTGTTGG ACAACATATG CTCTCATCCA
CCCCTTTGAC CTTTATGTGC TGATCAGCAA CGGTATTGGA GCAATCTCCG GACTAGTTCA GCTCCTGTTA TATGCATGTT
ACTGTTCCTG CAAGAGTGAA AAAGATGACG ATGGTGATCA TGATTTGAAA CCAGCTGGGG TTCAGCTCTC CAACATAAAT
GGAACAGTGG CTGTGTGA

>Vigan.11G020200.01
MVNPAIARNV VGIIGNVISF GLFFSPAPTF YGIVKKKSVE EFKPDPYLAT VLNCAFWVFY GMPFVHPNSI LVLTINSVGL
VFEFFYLTIY YIYATNKGRK KVLIFLLIEL IFFAAVALVT MLALHGTKKR SLVVGILSDI FNVMMYVSPL TVMAKVIKTK
SVKYMPFWLS VANFLNGLCW TTYALIHPFD LYVLISNGIG AISGLVQLLL YACYCSCKSE KDDDGDHDLK PAGVQLSNIN
GTVAV*