VIGGS:GBrowse

Vigan.11G023600.01

Basic Information:

Name:	Vigan.11G023600.01 Multiple alignment Variant Information
Position:	Chr11:2391391..2392735 (+ strand)
Length:	1345

Functional Information:

Description:	Similar to Transcription factor C2H2. [B3IX35, Lotus japonicus]
GO:	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	Zinc finger, AN1-type (IPR000058)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:16.23,5.05,19.35,3.49,17.79,8.37,5.77,4.02

Structure :

[show][hide]Parts:

Position:	Chr11:2391391..2391449 (+ strand)
Length:	59
Type:	five_prime_UTR

Position:	Chr11:2391450..2391557 (+ strand)
Length:	108
Type:	CDS

Position:	Chr11:2392005..2392475 (+ strand)
Length:	471
Type:	CDS

Position:	Chr11:2392476..2392735 (+ strand)
Length:	260
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G023600.01
AATCTCTTCA ATTCAATTTT ATCGGTTTTT CCTTTTTCCA CAAACTCAAA ACCCTAACAA TGGCATCAGG CGGAACCGAG
GCCTTTCCAG ATTTGGGTAA ACACTGCCAA CACAGCGATT GCCACCAACT CGATTTTCTT CCTTTCACAT GCCAAGGTTG
CCAAAAGGTG TTTTGTTTGG AGCACAGATC CTTCAAGTCT CACGCGTGCA AGAATTCCGA CCACAACAGC AGAAAAGTGG
TTGTCTGCGA AACGTGTTCC ATGTCCATTG AGACCACCGG CTATGTGGGA CAGGAAGAGG AGGCAATCTT GGAGAAGCAC
CTAAAGTCTG GGAACTGTGA TCCCACCAAG AAGAAGAAAC CCGTTTGCCC TGTCAAGCGC TGCAAGGAGG TTTTGACTTT
CTCCAACACC AGTACCTGTA AAACTTGCCA CATTAAGGTG TGCCTCAAGC ACCGTTTCCC TGCTGATCAT GCTTGCAGCC
GAGGAGTTTC AGCTTCTTCC TCATCCTCTG TTGCTGATAG TGGATGGAAG AATCGGTTTT TGGCTGCTTT AGGTTTAAGG
GCTGGACAGA ACTGTGCCAA AACTGGTTCA TCTCGTTCTA CCTCTCCTCC TAGCACTCCT TCTGTCAAGG CCTATTGAAT
GCTATTTGCT TTGAATGATT TCAGAGTGGT TTGATGGAAT GTTGTAGTAT GTTCCATTCT GTTGCAATTT GAATGTTCAA
ATTTACAGCA TAAACTACGA TATTTATTTA GATGTCGTGT GGTAGCACAC ATCATTGTTC CCATTTGATT TAGGTTCATA
AATACCTTTT CAATGTACAT CCTTGCTTAT AAAACCAAAT ACTGAAAGGT TCAATTGCCA TTCATACAAT TCACGATGGT
TCTCAATCTT CTTTAATA

[show][hide][copy]CDS

>Vigan.11G023600.01
ATGGCATCAG GCGGAACCGA GGCCTTTCCA GATTTGGGTA AACACTGCCA ACACAGCGAT TGCCACCAAC TCGATTTTCT
TCCTTTCACA TGCCAAGGTT GCCAAAAGGT GTTTTGTTTG GAGCACAGAT CCTTCAAGTC TCACGCGTGC AAGAATTCCG
ACCACAACAG CAGAAAAGTG GTTGTCTGCG AAACGTGTTC CATGTCCATT GAGACCACCG GCTATGTGGG ACAGGAAGAG
GAGGCAATCT TGGAGAAGCA CCTAAAGTCT GGGAACTGTG ATCCCACCAA GAAGAAGAAA CCCGTTTGCC CTGTCAAGCG
CTGCAAGGAG GTTTTGACTT TCTCCAACAC CAGTACCTGT AAAACTTGCC ACATTAAGGT GTGCCTCAAG CACCGTTTCC
CTGCTGATCA TGCTTGCAGC CGAGGAGTTT CAGCTTCTTC CTCATCCTCT GTTGCTGATA GTGGATGGAA GAATCGGTTT
TTGGCTGCTT TAGGTTTAAG GGCTGGACAG AACTGTGCCA AAACTGGTTC ATCTCGTTCT ACCTCTCCTC CTAGCACTCC
TTCTGTCAAG GCCTATTGA

[show][hide][copy]PROTEIN

>Vigan.11G023600.01
MASGGTEAFP DLGKHCQHSD CHQLDFLPFT CQGCQKVFCL EHRSFKSHAC KNSDHNSRKV VVCETCSMSI ETTGYVGQEE
EAILEKHLKS GNCDPTKKKK PVCPVKRCKE VLTFSNTSTC KTCHIKVCLK HRFPADHACS RGVSASSSSS VADSGWKNRF
LAALGLRAGQ NCAKTGSSRS TSPPSTPSVK AY*