GBrowse Details

Vigan.11G038500.01

Basic Information:
Name: Vigan.11G038500.01
Multiple alignment
Variant Information
Position: Chr11:4337552..4340577 (+ strand)
Length: 3026
Functional Information:
Description: Similar to Hypersensitive induced reaction protein 1. [G8FVT3, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Band 7 protein (IPR001107)
Stomatin family (IPR001972)
Hypersensitive-induced response protein (IPR028512)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:166.73,40.52,16.25,137.75,31.42,100.46,109.31,16.86
Automatic updates:
Name: NM_001249807 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SPFH domain-containing protein (LOC100306559), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001279014 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum hypersensitive-induced response protein 2-like (LOC101508404), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289276 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hypersensitive-induced response protein 2-like (HIR1), mRNA.
PubMed ID: 25501569 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:4337552..4338431 (+ strand)
Length: 880
Type: five_prime_UTR
Position: Chr11:4338432..4338620 (+ strand)
Length: 189
Type: CDS
Position: Chr11:4338950..4339070 (+ strand)
Length: 121
Type: CDS
Position: Chr11:4339257..4339348 (+ strand)
Length: 92
Type: CDS
Position: Chr11:4339478..4339574 (+ strand)
Length: 97
Type: CDS
Position: Chr11:4339906..4340270 (+ strand)
Length: 365
Type: CDS
Position: Chr11:4340271..4340577 (+ strand)
Length: 307
Type: three_prime_UTR


>Vigan.11G038500.01
GTGAATTTCT GCTCTTTGTT TTTGGGTGCT GATAAAAAGA ACCAGTTTTT GGTCTTTGAA TTTTCTTATG CGTGATTCAC
GCGTTATAAC TTTAAATTGT GTTCGCTTAA ACATTTTTGT CAAAAGGGTT TGTATTAATT TTTGTGTTTG CTTTCTGGGA
TCAGCTCAAA ATTGCATCTT TTTTGTTGGG TGGTTTGAAT TTTCCTTGAA GTTTTGGTTT GGGAACTTTT AGGTTTCTTC
GATCCTAATA TTTGGTTGAT AATTCGTGTC TCACTGTTTC TCACTTTTAG GGTTCTGTAT TTGTTTTTCT GGAATTTTGT
TGCTTTCCTC TGCTCGATTC TTAGGAAAAC AGAGAAAGTG GAGTTCCAAT CCAAATGAGT ATTTATTATG TTGAAAACCG
AGTTTTTGTT ATTGGATGTG TAGTTGAATC TTGTTATGTT GTTGTTTCGT TTGTCTTTTG TCTTTTAATT TTGTTCCCCC
TTAAAAATAC AGGTATATTG GATAAACTTA ATTGTAATTT TTTACTGTGG TGTCGTACTT AATCCATTGT CTTATTCTTT
GAAAACATAA ACATGGTTCA CTTTTATTGC ATTTATTTTC CTCTGGTTTG AGTATTTCTT TAGGCTGAGA GCCGTTGGTT
TTTGTTGACT TTTTACCCAC TGTTTCTTTA CATTCATATT TCTGAAATTT TGTATTTCTT CCATCCACTA TATCCGCTTT
CTGTGGTTAA GCGTATTTTT AGATTTTACT TTATCACTTT CTTGGTAAAC TGGGGATGGG AATTCAGAAA ACTAAAGCAG
ATTTGTGGAA GCAAAATGCT AAATTTCACT ATGTTTGGTC TATTTTGTTG AGTAGTGTTA CTCTATTGCA GAATTGAAGA
ATGGGTCAAG CATTCGGTTG CTATCAAGTT GATCAGTCAA ATGTGGCCAT CAAGGAGCAT TTTGGAAAAT TTTCTGATGT
TCTAGAACCT GGATGCCATT GTCTGCCTTG GTGTCTTGGG TATCAGATCG CTGGTGGTTT GTCACTGCGT GTGCAGCAAC
TTGATGTTCG ATGTGAGACG AAAACAAAGG ATAACGTCTT TGTCACTGTG GTTGCGTCTG TGCAATACCG AGCTGTTGCT
GAGAAAGCAT CTGATGCATT CTATAGGCTT ACCAACACAA GGGAGCAGAT CCAATCATAT GTTTTTGATG TTATCAGGGC
CAGTGTACCA AAGTTGGAGT TGGATTCTGT CTTTGAGCAG AAGAATGATA TAGCAAAAGC TGTGGAGGAG GAGCTTGAGA
AGGCCATGTC AACTTATGGA TTTGAGATAG TCCAGACCCT CATTGTTGAT ATTGAGCCCG ACGTTAATGT CAAGAGAGCA
ATGAACGAGA TTAATGCAGC TGCTAGATTA AGGTTGGCTG CAAATGAGAA GGCTGAAGCA GAAAAAATTC TGCAGATCAA
GAAAGCAGAG GGAGAAGCAG AATCTAAGTA TCTGTCAGGA CTCGGTATAG CTCGCCAACG TCAGGCCATT GTGGATGGAC
TGAGGGACAG TGTGCTTGCC TTCTCTGAGA ACGTGCCTGG GACAACAGCT AAAGATGTGA TGGACATGGT CCTGGTGACT
CAATACTTTG ACACCATGAA AGAGATAGGG GCATCTTCGA AGTCGTCGTC GGTGTTCATA CCGCACGGCC CTGGTGCCGT
GAAGGACATC GCCGTGCAGA TTAGGGATGG TCTTCTTCAG GCTAGTGCTT CACAGACAAA TTAAGCTTTC TCGGAGTTGT
AAATGACGTA GTGTGTATGT TTTCTTCTTT TGTTTGGACT TAGAATGTCT GCATATTTTC CTGTTCCTAT TTTGCATGTG
TTCATAATAC ATCTTAAGTA CTGATGTGCA GTTTTTTTAA TACTTGTGTT GAGGATAGTT TTGATGACAA GGTGTTTGTG
AATCCTATTA TTGGAGGATA TGCTATATAA GAATTACTTT CCAAAAGATG TGTTCTTCTT GAGTTCTATC TTGTAAGTTG
TAAATTGAAT GTGTAAAATT GCAGTTCTCT ATATTTACTA TTTTTGTTGC A

>Vigan.11G038500.01
ATGGGTCAAG CATTCGGTTG CTATCAAGTT GATCAGTCAA ATGTGGCCAT CAAGGAGCAT TTTGGAAAAT TTTCTGATGT
TCTAGAACCT GGATGCCATT GTCTGCCTTG GTGTCTTGGG TATCAGATCG CTGGTGGTTT GTCACTGCGT GTGCAGCAAC
TTGATGTTCG ATGTGAGACG AAAACAAAGG ATAACGTCTT TGTCACTGTG GTTGCGTCTG TGCAATACCG AGCTGTTGCT
GAGAAAGCAT CTGATGCATT CTATAGGCTT ACCAACACAA GGGAGCAGAT CCAATCATAT GTTTTTGATG TTATCAGGGC
CAGTGTACCA AAGTTGGAGT TGGATTCTGT CTTTGAGCAG AAGAATGATA TAGCAAAAGC TGTGGAGGAG GAGCTTGAGA
AGGCCATGTC AACTTATGGA TTTGAGATAG TCCAGACCCT CATTGTTGAT ATTGAGCCCG ACGTTAATGT CAAGAGAGCA
ATGAACGAGA TTAATGCAGC TGCTAGATTA AGGTTGGCTG CAAATGAGAA GGCTGAAGCA GAAAAAATTC TGCAGATCAA
GAAAGCAGAG GGAGAAGCAG AATCTAAGTA TCTGTCAGGA CTCGGTATAG CTCGCCAACG TCAGGCCATT GTGGATGGAC
TGAGGGACAG TGTGCTTGCC TTCTCTGAGA ACGTGCCTGG GACAACAGCT AAAGATGTGA TGGACATGGT CCTGGTGACT
CAATACTTTG ACACCATGAA AGAGATAGGG GCATCTTCGA AGTCGTCGTC GGTGTTCATA CCGCACGGCC CTGGTGCCGT
GAAGGACATC GCCGTGCAGA TTAGGGATGG TCTTCTTCAG GCTAGTGCTT CACAGACAAA TTAA

>Vigan.11G038500.01
MGQAFGCYQV DQSNVAIKEH FGKFSDVLEP GCHCLPWCLG YQIAGGLSLR VQQLDVRCET KTKDNVFVTV VASVQYRAVA
EKASDAFYRL TNTREQIQSY VFDVIRASVP KLELDSVFEQ KNDIAKAVEE ELEKAMSTYG FEIVQTLIVD IEPDVNVKRA
MNEINAAARL RLAANEKAEA EKILQIKKAE GEAESKYLSG LGIARQRQAI VDGLRDSVLA FSENVPGTTA KDVMDMVLVT
QYFDTMKEIG ASSKSSSVFI PHGPGAVKDI AVQIRDGLLQ ASASQTN*