GBrowse Details

Vigan.11G039000.01

Basic Information:
Name: Vigan.11G039000.01
Multiple alignment
Variant Information
Position: Chr11:4387212..4391256 (+ strand)
Length: 4045
Functional Information:
Description: Similar to Uncharacterized protein. [K7MLV7, Glycine max]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Auxin efflux carrier (IPR004776)
Auxin efflux carrier, plant type (IPR014024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.35,2.89,1.69,0.98,0.33,0.17,0.39,2.51
Automatic updates:
Name: NM_001280578 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PIN auxin efflux transporter family protein (GMPIN8A), mRNA.
PubMed ID: 26572792 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:4387212..4387606 (+ strand)
Length: 395
Type: five_prime_UTR
Position: Chr11:4387607..4388126 (+ strand)
Length: 520
Type: CDS
Position: Chr11:4388870..4389047 (+ strand)
Length: 178
Type: CDS
Position: Chr11:4389324..4389409 (+ strand)
Length: 86
Type: CDS
Position: Chr11:4389517..4389674 (+ strand)
Length: 158
Type: CDS
Position: Chr11:4389854..4389930 (+ strand)
Length: 77
Type: CDS
Position: Chr11:4390009..4390081 (+ strand)
Length: 73
Type: CDS
Position: Chr11:4390082..4391256 (+ strand)
Length: 1175
Type: three_prime_UTR


>Vigan.11G039000.01
TGGTCTAACA GAGAGACACT GTAAAAGATG AAAGTGGAAG TTTTTATGCT GAAGGACTGA AAAGGATGAT GGAACCAAGA
TTGTATTTTA GTGCTGCAAA AATGTATGAT AGATGAATTG ACATAAATGA AATGAGTGTA TGAGAAAAGG GTTATATATT
TGGTTGAGAA AAGCATGAGG GCATGGGGAG AAGAATAGAG AGAGAATAGA GAAAAGGGTG ATAGGTCACT GTGAAGAAGC
ATCTTGTAAA ATAGATTATT CTATGCTACT CCTAGTGAGA TTATTCTATC CTAGTAATTG AAAAATCAGC AAAGTAGCCT
AAAAAGCATG TAGGATAGCA TATTATAAGC TGTAGATCAT GTCCTAAATC TTTCAACAGT TGTTAGTTAG GCATCATGAT
TTCCTTAGCA GATGTCTACC ATGTTGTCAC TGCCACTGTC CCATTATATG TGACCATGGT TCTAGCCTAC ATCTCAGTCA
AGTGGTGGAA GCTCTTCACC CCAGAACAAT GTTCAGGCAT AAACAAATTT GTGGCCAATT TCTCAGTCCC TATTCTGTCA
TTCCAAGTCA TTTCATCCAA CAACATTTAC AAAATGAGCC TCAAACTGGT TTATGCAGAC TGTGTTCAGA AATTGCTTGC
ATTCCTGATC TTCACAGCAA TCATTAAGAT CAAGGGCAGG GGGGGTTTGA AGTGGATCAT AACTGGTCTC TCACTCTCAA
CACTTCCCAA CACTTTGATC CTTGGAATTC CTCTCATGAA GGCCATGTAC AGAGATGAAG CTTCTCTTCT CCTGCCACAG
GTTATTTTCC TCCAGAGCAT GGTCTGGTAC AATCTCTTGT TGTTTCTTCA TGAGTTGGAT GCTGCAATTC CTGCAAGGAC
CATGCCTGTT GTTGCACCAC CATCACAAGA CTCAGGAGAA TCTGAGACTT CTCAGGAGAT ACAATCAAAA GAAGAAGAAG
AAGAAGAAGA ACATAGAACA CAGAACAAAA CGAGGATGTT GATCATTCTT ATGAAAGTGG GGAATAAATT AATCATTAAT
CCTAATACCT ATGCAACTTT CATAGGTCTT ATTTGGGCAA GCATACATTT CAGGTGGGGA GTGGATATGC CAGATGTTGT
TAACCAGTCA ATAGAAATAT TGGCCAGTGG AGGTCTAGGC ATGGCAACTT TCAGCTTAGG TCTATTTATG GCATCAAACA
ACAGAATCAT AGCATGTGGG CCAAGGATGA CAATGGTGGC AATGGGCCTG AAATTTCTTG TTGGGCCTGC TATAATGGCT
GTAGCCTCCA TTGTGATTGG ATTAAGAGAT AGAATGCTCA AAGTGGCAAT CATTCAGGCA GCTCTACCCC AAGGAATTGT
TCCTTTTGTT TTTGCTAGAG AGTATAATGT CCACCCAGGA ATTTTAAGCA CAGGGGTCTT GCTAGGAATG CTCATGGCCT
TGCCTGTGGC ATTGACCTAC TATGTCCTCT TGTCACTCTG CTTCTGATAC ACTATGTCAA GTATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATTA TATACCAGAA ACAATGACAG AAGAGTTTGC ATTGGTGTAA
AACCAACAGC TTAAACATAG TTGTATATTG TCAGTATTGA TTCATATATA GTTAGAGAGA AAAAAAAACA AGATATGTTT
ATCACAAATT GCATGAGTAG AGAAACAAAA AAATATATTT TGCATCAGTT GGTTCAACAA AGAAATAAAG CATGATTGTG
CTTTCATCAT CTTAAAAATT CAAATACCAA GAAATTAGAT ATACTGTAAT TAAGGTTTTG AAGTATCTAA AAATGATGAA
GTGACTTGTC CAGAACGTTT GAAGTATCTT TTGATGGATT GAAGTCTAGG TTCGGTTGAA ATTAAGTGAC ACTAAAGTGT
GACTGAGATG GCTGTAAAAA GCACTATGAC CCTCAAGAAT ACTAGAATTA TGAAGCTAAG TGATGATGTA TTATGCTACA
TTAACTTGAC TATATACAAA AAAGTCAGAA ATTAATTGAA TTTCCTAATA CGTGCCTTAA GTTTTATGTG AATAATATAT
TCTTTTAATC CAATCATGAT TCACTATTTG TCGATGTTAG TGTTCTTGCA AGGGTTGTTG ACTAGGTGTT AATCTCTGTG
AATATTTGTA ATGTGATTTT CTGCTATCCT AACATTGGCG TAGTTGCTAT ATGGATTGGA CTCTTTTCGC AACGTGTCCG
AAGAACATAA AACAAATAAC CTTCAAACAA TACATGCGGT GTGTTTTAGG AATCAAATTC TGCAATTACT CAATATATAA
CACGTGTGAA AAGTGGTGAG AAAAAGTTAG AGACGAATTT TTTTACAAAA TCTTAATGGA ATAAAATCCA AAGTTGACTA
AGTTAGAAAT TTGGAATGAA AATGTCCTAT AGTTTGGAGG TGCGATGAAG ATGTGAAGGT AAACTCAAGT ATAGAAGTGA
TTACTTTTAA CAAAAGATAA CGAGCAAAAT ACACCTAATG GCATCTACCT TTCTACCTTC TCTAAATTCA AAATGAATAG
TGCTATCATG CAATCCTCTC CACTCGCGAA TCACATTGTT GGTGATAGTT TCCACGTGTA TATATGATTT CGCTTATTGG
TAAATTTCAG TGGGAGTAGT GT

>Vigan.11G039000.01
ATGATTTCCT TAGCAGATGT CTACCATGTT GTCACTGCCA CTGTCCCATT ATATGTGACC ATGGTTCTAG CCTACATCTC
AGTCAAGTGG TGGAAGCTCT TCACCCCAGA ACAATGTTCA GGCATAAACA AATTTGTGGC CAATTTCTCA GTCCCTATTC
TGTCATTCCA AGTCATTTCA TCCAACAACA TTTACAAAAT GAGCCTCAAA CTGGTTTATG CAGACTGTGT TCAGAAATTG
CTTGCATTCC TGATCTTCAC AGCAATCATT AAGATCAAGG GCAGGGGGGG TTTGAAGTGG ATCATAACTG GTCTCTCACT
CTCAACACTT CCCAACACTT TGATCCTTGG AATTCCTCTC ATGAAGGCCA TGTACAGAGA TGAAGCTTCT CTTCTCCTGC
CACAGGTTAT TTTCCTCCAG AGCATGGTCT GGTACAATCT CTTGTTGTTT CTTCATGAGT TGGATGCTGC AATTCCTGCA
AGGACCATGC CTGTTGTTGC ACCACCATCA CAAGACTCAG GAGAATCTGA GACTTCTCAG GAGATACAAT CAAAAGAAGA
AGAAGAAGAA GAAGAACATA GAACACAGAA CAAAACGAGG ATGTTGATCA TTCTTATGAA AGTGGGGAAT AAATTAATCA
TTAATCCTAA TACCTATGCA ACTTTCATAG GTCTTATTTG GGCAAGCATA CATTTCAGGT GGGGAGTGGA TATGCCAGAT
GTTGTTAACC AGTCAATAGA AATATTGGCC AGTGGAGGTC TAGGCATGGC AACTTTCAGC TTAGGTCTAT TTATGGCATC
AAACAACAGA ATCATAGCAT GTGGGCCAAG GATGACAATG GTGGCAATGG GCCTGAAATT TCTTGTTGGG CCTGCTATAA
TGGCTGTAGC CTCCATTGTG ATTGGATTAA GAGATAGAAT GCTCAAAGTG GCAATCATTC AGGCAGCTCT ACCCCAAGGA
ATTGTTCCTT TTGTTTTTGC TAGAGAGTAT AATGTCCACC CAGGAATTTT AAGCACAGGG GTCTTGCTAG GAATGCTCAT
GGCCTTGCCT GTGGCATTGA CCTACTATGT CCTCTTGTCA CTCTGCTTCT GA

>Vigan.11G039000.01
MISLADVYHV VTATVPLYVT MVLAYISVKW WKLFTPEQCS GINKFVANFS VPILSFQVIS SNNIYKMSLK LVYADCVQKL
LAFLIFTAII KIKGRGGLKW IITGLSLSTL PNTLILGIPL MKAMYRDEAS LLLPQVIFLQ SMVWYNLLLF LHELDAAIPA
RTMPVVAPPS QDSGESETSQ EIQSKEEEEE EEHRTQNKTR MLIILMKVGN KLIINPNTYA TFIGLIWASI HFRWGVDMPD
VVNQSIEILA SGGLGMATFS LGLFMASNNR IIACGPRMTM VAMGLKFLVG PAIMAVASIV IGLRDRMLKV AIIQAALPQG
IVPFVFAREY NVHPGILSTG VLLGMLMALP VALTYYVLLS LCF*