GBrowse Details

Vigan.11G040700.01

Basic Information:
Name: Vigan.11G040700.01
Multiple alignment
Variant Information
Position: Chr11:4506755..4510005 (+ strand)
Length: 3251
Functional Information:
Description: Similar to Aldose 1-epimerase. [V7C1Q5, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: hexose metabolic process (GO:0019318)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: isomerase activity (GO:0016853)
Molecular Function: carbohydrate binding (GO:0030246)
InterPro: Aldose 1-/Glucose-6-phosphate 1-epimerase (IPR008183)
Galactose mutarotase-like domain (IPR011013)
Glycoside hydrolase-type carbohydrate-binding, subgroup (IPR014718)
Aldose 1-epimerase (IPR015443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.34,0.13,17.55,8.14,19.46,8.84,47.79,7.76
Automatic updates:
Name: NM_001255025 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aldose 1-epimerase-like (LOC100803092), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:4506755..4506908 (+ strand)
Length: 154
Type: five_prime_UTR
Position: Chr11:4506909..4507089 (+ strand)
Length: 181
Type: CDS
Position: Chr11:4507192..4507241 (+ strand)
Length: 50
Type: CDS
Position: Chr11:4508220..4508343 (+ strand)
Length: 124
Type: CDS
Position: Chr11:4508489..4508596 (+ strand)
Length: 108
Type: CDS
Position: Chr11:4509046..4509692 (+ strand)
Length: 647
Type: CDS
Position: Chr11:4509693..4510005 (+ strand)
Length: 313
Type: three_prime_UTR


>Vigan.11G040700.01
ATCTCCTTTC AATCTTCTTT TAAGTATCAC AAACCATTAA CTTTTTAGCA TTCACTTTTG CAGTTTCTCT GTTTTCTCTT
CACCTCTTGC TAGCTCTATA ATTCCATAAA ACAGCATTCT GAGAGTTTCC TTAAATGCTT GGTACCATAA TACAATGACC
AAGATCTTTG TGTTGTCGTG TGTTCTGTTC TTAGCTGCTT CTGGTTTTGT CCATGGCTCT CATGAGAAGA AGAAGGATCA
TATTAGGTTG TTTGAGCTGA AGAAAGGTGA TCTTTCTATA AAGGTCACCA ACTGGGGTGC AACACTTGTG TCTGTCATAC
TTCCTGATAA AAATGGAGTG CTGGGTGATA TTGTTCTTGG ATATGATTCT CCCATGGCAT ACACCAATGA TTCATCATAT
TTTGGAGCTA CAGTTGGCAG GATTGGTAAC AGAATTGGAG GAGCTCAGTT CACTCTGAAT GGAATCCATT ACAAATTAGT
TGCTAATGAA GGAAACAACA CACTTCATTC TGGACCCAAA GCATTCAGTG ATGTTCTTTG GGATGTGAAA AAGTATATAA
AAGATGGAGA CAAACCAAGA ATCACCTTCA GCTACCTCAG TTTTGATGGT GAAGGAGGAT TTCCTGGGGA CCTGCTAGTA
ACTGTGAGCT ACATTCTTGG GAAAAACTCA CTGAGTATAA TCATGAAAGC AAAAGCACTG AACAAGGCTA CACCTGTGAA
TCTGTTGAAC CATGCATACT GGAACCTAGG GAACCACAAC AGTGGCAATA TTCTTAATGA AGTGGTTCAG ATATTTGGAT
CTCAAGTGAC CCTTTTCGAT GATAATCTCA TTCCCACAGG AAAATTTGCC TCTGTGAAGG GCACCCCATA TGACTTCCTT
GAACCACACA CTGTTGGGGA AAGGATCAAC CAATTGGCAA AGACCAATGG CTATAACACG AACTATGTGC TTGATGGTGC
AAAAGGCAAA AAGACAAAGC TTGGTGCCAT AGTGGTTGAT AAGAAGTCAG GGAGAGTGAT GAAACTCTTC ACAAATGCTC
CTGGTTTGCA GTTCTACACT GCTAATTTTG TCAAGAATGA AAAGGGAAAA GGGGGTTTTG TTTATCAGCC ACGTTCAGCA
CTGTGTTTGG AGAGCCAAGC ATTCCCTGAT TCTGTCAATC ACCCTAATTT TCCATCAACC ATTGTCACTC CTCAAAAGCC
TTACAAACAT GTCTTGTTGC TCAAATTTTC CACCAAAATT CCACATGCCT TTTCACATTT CTAAATGGAA TTCTGTGCTC
TCTGCCACTT TTTTATGTGC TTGTTGGTAT CAGTGTAGCA TGATTCCTGT TCTATTAAAC TGAATAATGA AATGTTTCAA
TTTTCTGCAT CTATTGTATT TACCCTTTTC AGTAATCATA TATCCTATAG AATGCATTTA TTTCTGAAAG AGCACAGATA
GAAACAAAAT GTCTATGTGA ATGCCTTGTT GGTTGTCAGA AATTGATAAA ATTCAAGCCC CTATGGCCTA TGTGATGTAG
TACCAAAAAT GCTATCAGAC TCAGTAAACT ATATATACTG CTGGTAGTTC CCATCAG

>Vigan.11G040700.01
ATGACCAAGA TCTTTGTGTT GTCGTGTGTT CTGTTCTTAG CTGCTTCTGG TTTTGTCCAT GGCTCTCATG AGAAGAAGAA
GGATCATATT AGGTTGTTTG AGCTGAAGAA AGGTGATCTT TCTATAAAGG TCACCAACTG GGGTGCAACA CTTGTGTCTG
TCATACTTCC TGATAAAAAT GGAGTGCTGG GTGATATTGT TCTTGGATAT GATTCTCCCA TGGCATACAC CAATGATTCA
TCATATTTTG GAGCTACAGT TGGCAGGATT GGTAACAGAA TTGGAGGAGC TCAGTTCACT CTGAATGGAA TCCATTACAA
ATTAGTTGCT AATGAAGGAA ACAACACACT TCATTCTGGA CCCAAAGCAT TCAGTGATGT TCTTTGGGAT GTGAAAAAGT
ATATAAAAGA TGGAGACAAA CCAAGAATCA CCTTCAGCTA CCTCAGTTTT GATGGTGAAG GAGGATTTCC TGGGGACCTG
CTAGTAACTG TGAGCTACAT TCTTGGGAAA AACTCACTGA GTATAATCAT GAAAGCAAAA GCACTGAACA AGGCTACACC
TGTGAATCTG TTGAACCATG CATACTGGAA CCTAGGGAAC CACAACAGTG GCAATATTCT TAATGAAGTG GTTCAGATAT
TTGGATCTCA AGTGACCCTT TTCGATGATA ATCTCATTCC CACAGGAAAA TTTGCCTCTG TGAAGGGCAC CCCATATGAC
TTCCTTGAAC CACACACTGT TGGGGAAAGG ATCAACCAAT TGGCAAAGAC CAATGGCTAT AACACGAACT ATGTGCTTGA
TGGTGCAAAA GGCAAAAAGA CAAAGCTTGG TGCCATAGTG GTTGATAAGA AGTCAGGGAG AGTGATGAAA CTCTTCACAA
ATGCTCCTGG TTTGCAGTTC TACACTGCTA ATTTTGTCAA GAATGAAAAG GGAAAAGGGG GTTTTGTTTA TCAGCCACGT
TCAGCACTGT GTTTGGAGAG CCAAGCATTC CCTGATTCTG TCAATCACCC TAATTTTCCA TCAACCATTG TCACTCCTCA
AAAGCCTTAC AAACATGTCT TGTTGCTCAA ATTTTCCACC AAAATTCCAC ATGCCTTTTC ACATTTCTAA 

>Vigan.11G040700.01
MTKIFVLSCV LFLAASGFVH GSHEKKKDHI RLFELKKGDL SIKVTNWGAT LVSVILPDKN GVLGDIVLGY DSPMAYTNDS
SYFGATVGRI GNRIGGAQFT LNGIHYKLVA NEGNNTLHSG PKAFSDVLWD VKKYIKDGDK PRITFSYLSF DGEGGFPGDL
LVTVSYILGK NSLSIIMKAK ALNKATPVNL LNHAYWNLGN HNSGNILNEV VQIFGSQVTL FDDNLIPTGK FASVKGTPYD
FLEPHTVGER INQLAKTNGY NTNYVLDGAK GKKTKLGAIV VDKKSGRVMK LFTNAPGLQF YTANFVKNEK GKGGFVYQPR
SALCLESQAF PDSVNHPNFP STIVTPQKPY KHVLLLKFST KIPHAFSHF*