GBrowse Details

Vigan.11G040800.01

Basic Information:
Name: Vigan.11G040800.01
Multiple alignment
Variant Information
Position: Chr11:4510698..4516512 (+ strand)
Length: 5815
Functional Information:
Description: Similar to 3-dehydroquinate synthase. [G7IDE5, Medicago truncatula]
GO: Biological Process: aromatic amino acid family biosynthetic process (GO:0009073)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: 3-dehydroquinate synthase activity (GO:0003856)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: 3-dehydroquinate synthase (IPR002812)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.46,3.05,2.44,6.10,2.10,3.04,0.39,2.72
Arabidopsis thaliana homolog: AT3G28760.2
Automatic updates:
Name: NM_001415097 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 3-dehydroquinate synthase homolog (LOC100806285), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:4510698..4510835 (+ strand)
Length: 138
Type: five_prime_UTR
Position: Chr11:4510836..4511217 (+ strand)
Length: 382
Type: CDS
Position: Chr11:4511935..4512101 (+ strand)
Length: 167
Type: CDS
Position: Chr11:4512371..4512469 (+ strand)
Length: 99
Type: CDS
Position: Chr11:4512575..4512643 (+ strand)
Length: 69
Type: CDS
Position: Chr11:4512714..4512854 (+ strand)
Length: 141
Type: CDS
Position: Chr11:4512943..4513032 (+ strand)
Length: 90
Type: CDS
Position: Chr11:4513726..4513893 (+ strand)
Length: 168
Type: CDS
Position: Chr11:4515628..4515703 (+ strand)
Length: 76
Type: CDS
Position: Chr11:4515780..4515907 (+ strand)
Length: 128
Type: CDS
Position: Chr11:4515908..4516512 (+ strand)
Length: 605
Type: three_prime_UTR


>Vigan.11G040800.01
GATCACTGGC CTTTTCCAGT GAGGCCGGTA TCACGTGACT TGGAACACCA GAAAGAGATG CCACGTGACT CAAGAAGATG
AGGTTGCACA CGGTCACTCC CTGGTTGCCG TTGCAGACTT CATCAACGAC AACATAGGAT GGCACTGCTG TCGCATATTT
GCATCTCTCA CTTCTCTTCA ATTGCACCTT CTTCATCTTT CTCCGTTTCA CCAACCACTT TCCTCCAATG TTCTTGGTTG
TCCACAGACT CTGGAAACAT TCGAGCCACA AACCTTTGTT CCAACTTTAA TTCTCTTCAT TGTGGAAAGA CCCTTTTGCG
GCATAGGCGT AATAGTCCTT GTTTCTCAAT GCCATCTTCT TCTTCTCCTT CTCGGACATC GTGGGATGAG ACTGGTAAAC
GATCCAAGAG AGTGTGGATA TGGACCACGA ACAAGCAGGT AATGACTGCG GCAGTAGAGA GAGGATGGAA TACTTTTGTT
TTCCCATCAC ACCATCGGCA ACTTGCTCAA GAATGGTCTT CAATTGCAGT AATATGCCCA CTTTTTGTTA ATGAGGGAGA
GGTTTTGGAT GAACAGAATA AAAGGGTAGC CACAATTTTT GACGTTTCAA ACCCAGAGGA GCTAGAGGGA CTTAGACCAG
AGGATGAACA GGCAGAGAGC ATTGTAGTTA ATTTACTAGA TTGGCAGGTA ATACCTGCTG AAAATATAAT AGCTGCATTT
CAAAGAAGCC AAAAGACCGT GTTTGCCATA TCTAATAATA CATCTGAAGC TCAGGTGTTT CTTGAGGCGC TTGAACATGG
TTTAGATGGC ATAGTTATGA AAATTGAAGA TGTTGAAGCT GTTCTTGAGC TAAAGGCATA TTTTGACAGA AGAATTGAAG
AAAGCAATCT ATTGAGCTTG ACTGAAGCCA CTGTGACACA TATTCAAGTG GCTGGAATGG GGGATCGTGT TTGTGTAGAT
CTCTGCAGTC TCATGAGACC TGGTGAAGGA CTTCTGGTTG GATCTTTTGC GAGAGGATTA TTTCTTGTTC ACTCAGAATG
CTTGGAGTCA AATTACATTG CAAGTAGGCC TTTCCGGGTG AATGCAGGAC CAGTGCATGC CTATGTTGCT GTTCCAGGAA
ACAGAACATC CTACCTGTCA GAATTGAAGT CGGGAAAAGA AGTTATTGTT GTTGATCAGC AGGGTCACCA ACGAATTGCT
ATTGTTGGGC GTGTAAAGAT AGAAAGTAGA CCACTAATCC TAGTGGAGGC AAAGATAGAA TCAGATAATC AAACTATCAG
CATCCTTTTA CAAAATGCAG AAACAGTTGC ATTGGTTTGT CCCCCACAAG GAAATACACT GTCAAAAACA GCCATTCCAG
TGACCTCACT CAAAGTTGGA GATGAAATTC TTTTGAGAAT ACAAGGAGGT GCTCGGCATA CAGGAATAGA AATTCAAGAA
TTTATAGTTG AGAAATGAAC TAGTAATAAT GTATTCAAGT TGTAGTACTC ATTCAAATTG TGAACCTTTG TTCTCCCTGC
AGTTATGATG GTAGAGTAGA TTATGATCTG GCCAGAGACA TGGAAACGAG CAGCTTATAT TTTGCTCTAC ACATGACATT
TGAGTTATGG AGTTAGGTTG GGCCAAAGGG TTAACATGAT TGCACAAAAG CAGTCACTCA CAGAACTGCT GATGTAATCA
CCAAGTGTTT GTTAACTTCA CCATCATGAT TGAGCTCTAA ATGCATCTTG GATGGAACTA GCTCTCCATT TCCTTCTTTC
AAATGTTTTT AGGGGCCTAT GAACTCATAG TTTGCATTGG GTTCATCTAA ATCAAAGATG TTGCAGACAT TTTCTTCAAA
ATTTTAAAAT TGAGGTGTCA TCTCTGATTT TGGCATTATT GGACACTTAA TATAGTCCCC CCAATTGAAC ACTTTTGCGT
CAGCACCTAC ATCTTGAGGC AGGTAACTCA GGTTTTGTTA TGCTGCCTGC ATAAGTTTCT CACTTGTTCT CTTTTCTTAT
AGCATGTATA TAAATTTGTA ATAGAAGTAA TTTATGGGTT GAAGTCCCAA CTTTTCGTCT AAA

>Vigan.11G040800.01
ATGGCACTGC TGTCGCATAT TTGCATCTCT CACTTCTCTT CAATTGCACC TTCTTCATCT TTCTCCGTTT CACCAACCAC
TTTCCTCCAA TGTTCTTGGT TGTCCACAGA CTCTGGAAAC ATTCGAGCCA CAAACCTTTG TTCCAACTTT AATTCTCTTC
ATTGTGGAAA GACCCTTTTG CGGCATAGGC GTAATAGTCC TTGTTTCTCA ATGCCATCTT CTTCTTCTCC TTCTCGGACA
TCGTGGGATG AGACTGGTAA ACGATCCAAG AGAGTGTGGA TATGGACCAC GAACAAGCAG GTAATGACTG CGGCAGTAGA
GAGAGGATGG AATACTTTTG TTTTCCCATC ACACCATCGG CAACTTGCTC AAGAATGGTC TTCAATTGCA GTAATATGCC
CACTTTTTGT TAATGAGGGA GAGGTTTTGG ATGAACAGAA TAAAAGGGTA GCCACAATTT TTGACGTTTC AAACCCAGAG
GAGCTAGAGG GACTTAGACC AGAGGATGAA CAGGCAGAGA GCATTGTAGT TAATTTACTA GATTGGCAGG TAATACCTGC
TGAAAATATA ATAGCTGCAT TTCAAAGAAG CCAAAAGACC GTGTTTGCCA TATCTAATAA TACATCTGAA GCTCAGGTGT
TTCTTGAGGC GCTTGAACAT GGTTTAGATG GCATAGTTAT GAAAATTGAA GATGTTGAAG CTGTTCTTGA GCTAAAGGCA
TATTTTGACA GAAGAATTGA AGAAAGCAAT CTATTGAGCT TGACTGAAGC CACTGTGACA CATATTCAAG TGGCTGGAAT
GGGGGATCGT GTTTGTGTAG ATCTCTGCAG TCTCATGAGA CCTGGTGAAG GACTTCTGGT TGGATCTTTT GCGAGAGGAT
TATTTCTTGT TCACTCAGAA TGCTTGGAGT CAAATTACAT TGCAAGTAGG CCTTTCCGGG TGAATGCAGG ACCAGTGCAT
GCCTATGTTG CTGTTCCAGG AAACAGAACA TCCTACCTGT CAGAATTGAA GTCGGGAAAA GAAGTTATTG TTGTTGATCA
GCAGGGTCAC CAACGAATTG CTATTGTTGG GCGTGTAAAG ATAGAAAGTA GACCACTAAT CCTAGTGGAG GCAAAGATAG
AATCAGATAA TCAAACTATC AGCATCCTTT TACAAAATGC AGAAACAGTT GCATTGGTTT GTCCCCCACA AGGAAATACA
CTGTCAAAAA CAGCCATTCC AGTGACCTCA CTCAAAGTTG GAGATGAAAT TCTTTTGAGA ATACAAGGAG GTGCTCGGCA
TACAGGAATA GAAATTCAAG AATTTATAGT TGAGAAATGA 

>Vigan.11G040800.01
MALLSHICIS HFSSIAPSSS FSVSPTTFLQ CSWLSTDSGN IRATNLCSNF NSLHCGKTLL RHRRNSPCFS MPSSSSPSRT
SWDETGKRSK RVWIWTTNKQ VMTAAVERGW NTFVFPSHHR QLAQEWSSIA VICPLFVNEG EVLDEQNKRV ATIFDVSNPE
ELEGLRPEDE QAESIVVNLL DWQVIPAENI IAAFQRSQKT VFAISNNTSE AQVFLEALEH GLDGIVMKIE DVEAVLELKA
YFDRRIEESN LLSLTEATVT HIQVAGMGDR VCVDLCSLMR PGEGLLVGSF ARGLFLVHSE CLESNYIASR PFRVNAGPVH
AYVAVPGNRT SYLSELKSGK EVIVVDQQGH QRIAIVGRVK IESRPLILVE AKIESDNQTI SILLQNAETV ALVCPPQGNT
LSKTAIPVTS LKVGDEILLR IQGGARHTGI EIQEFIVEK*