VIGGS:GBrowse

Vigan.11G041600.01

Basic Information:

Name:	Vigan.11G041600.01 Multiple alignment Variant Information
Position:	Chr11:4648815..4651222 (- strand)
Length:	2408

Functional Information:

Description:	Similar to Uncharacterized protein. [V7C1I4, Phaseolus vulgaris]
GO:	Molecular Function: protein dimerization activity (GO:0046983)
InterPro:	Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.10,13.48,4.87,3.05,0.09,2.64,5.05,8.29
Arabidopsis thaliana homolog:	AT3G28857.1

Automatic updates:

Name:	KT031128 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001250981 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305611 (LOC100305611), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:4648815..4649064 (- strand)
Length:	250
Type:	three_prime_UTR

Position:	Chr11:4649065..4649217 (- strand)
Length:	153
Type:	CDS

Position:	Chr11:4650507..4650629 (- strand)
Length:	123
Type:	CDS

Position:	Chr11:4650630..4651222 (- strand)
Length:	593
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.11G041600.01 class=Sequence position=Chr11:4648815..4651222 (- strand)
AAGAAGAAAC CTAATCTTTC TCTCTCTCTC TCTCTCTTTT CTCTTACTCT TCATTTTAAT TAAACACCAT GTTTTTGACA
CTGCCTTCCC AATGCAATTG TTTTCTTCTC ATCCAACATC ACTGTCTACT ATGTTATTGT ACTCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTTTCTT TATTTCTTTC TCCATCTTTC ACTCTTTCAT TGTGTGTGGT CCTTTGATTT TCCTTCTCTT
TATATCCCTC TTATCACTAT CTCCATTTCT GCATCCCTAG CTTGCATCCC AACACTGCTA TATTATAGCC TTTCTCTCCC
TCTCCATATT ATATAGCTTG TCTTTTATTT GTTACCCTCC ATACCAAACC AAAACCATTT TCAATCTTTT TCTCTATTCC
CTCTCCCACC TTCTTCTTCA TCATCATCTT CTTTACTTTC TTTCTTCACT TCTAGCTACT TTCAATAGTA ATAAACTCAA
CTGAAAGCTA CATACCAGCA AGTGCTCATA ATTAAGTACT AGACAATTAT ATTTCACCAA TTAAGGTCTA TCTAGCTATA
TTATATATAT ATATATAGAG AGAGAGAGAA AACATGTCTA GCAGAAGGTC AAGGCAACAA TCTGCATCAA CAAGGATCTC
AGATGACCAA ATCATCGACC TTGTTTCCAA GTTGCGTCAA CTTGTTCCTG AGATTCGTGA TAGACGCTCT GATAAGGTAT
TTCAGAATCT TCCCTTTCTC TTTATATCTC TCTCTAGGTG TCTATCGGAA TTAAAACATA TGTGTCCACT TGTATAATAT
ATGTGATTAT CTTCGAGTTA TTTAAATATA AGCAAATATT GCACTGAAAA TATAAAAATT TACTAACTAT ATGATACTAT
TCATCAAGAT ATTAACAATA TTATCATTTA AGAGCTTTCG CTTTGGTGAA CAATGTTTAG GCCTTATATA AGTAAATAGT
TTGAACAATG GTTCTCATGT ACGTATAAAG TACTGTTTTT ACAATGAAGA GAGAGGTAAA GAAGATTAAA AAGATGTCGT
AAAAAGTGCT AACTAAATAA ATAATATAAC TATATTATAC ATAGTTTCAC GTGGCCCGAA GCAGCTATAT ATAATTATAT
ATATAGATAG ATGATGAAGC CACTAGAAGA GAAGATCAAG GCACTGGAAT GATATTTTGC CATGTTTTGT TTGTTGCTAT
ATGACATGTT CTGGACTTTC GATGCATATT AGTCGGGTAA CACATGTAAT AAATTTATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT TATATGTATA ATGATAATTT TAATTGGTCA AATAATATAG TCAGATATTG ACCATAAGGG
AAAAGTTACC AACAGCTCCA AATCTTATGC AGATCCCTAT AATAGTCAAA GGGTTCACAT TGACTCGATC GTACAAATAT
ATGTATAGTT TTGAAAATAT ATAACTGTTA AAAGATTAAT AACAGTAACA CAGAACCCCA GAAAGAAAGA GACTTCAAAA
AGAAAAAAGG TCTGTGCAGT GTAACAATCA TGTGGTTAAT TTGGACCAAT TCGTGAAACG AAAGTTCCTG TATGGTCTCT
GAATAGGATT GCATCGTACA TAAAGATACA TATCATTCAC TCAACAGAAA AAAGAAAAAA AAATTTACAT AATTCAAACT
TATGGTTATT TTAAAAAAAT TAAATTACTC GTTTTTTGAT TTTATTTTAT CTTTTGATCA TCAAGCAACT TCTGATAAAA
TTTGTTAAAG ACTAAAGATA TATGTCTTAA AACCAGTCAC AACATTTGGA GAAGAAACAG ATAAGTGAAA GAAAGTTAAG
AAATGTTGTG TTTTAGAAAT GTGATTAAAG AATGTTTAGC CATGTGTTAA TTAAGATAAT GATAATAGTT ATAATCTGTT
AAGTGGTTTT TTGTGCAGTA TGAATGAGTG AATGATATCT GTTTGTATAT ATAGAGAGAA AAGAAAGTGA CTTATGGTTT
TGCAGGTATC AGCATCTAAG GTCCTACAAG AGACCTGTAA CTACATCAGA AGCTTACACA GAGAAGTGGA TGACTTGAGT
GAAAGACTGT CTCAGTTGTT GGCCACAATT GATGCTGATA GTCCTGAAGC TGCTATAATT AGGAGCCTAA TTAACTAGTA
ATAATCATAA TTAATAAGCA AGTCATGATC TAATTTTCCT ATATTCAAGG AGATATCATA TATAAGAGTG TATTAGTTTC
TTCTTCTTAG GTGCCATAGA GTGCAGTTTG AGTTGCCTCC TTCCTTAGTA TATGGCAGGA TTGGTGCACT TGTAATTTAA
AGATTTTGTA ATAATCAAAA TTAAGGACTC TGTATTATGG CTATAGTGCT ATATATTAAT ATATGCATGC CACATTTATA
GATGGCCA

[show][hide][copy]TRANSCRIPT

>Vigan.11G041600.01
AAGAAGAAAC CTAATCTTTC TCTCTCTCTC TCTCTCTTTT CTCTTACTCT TCATTTTAAT TAAACACCAT GTTTTTGACA
CTGCCTTCCC AATGCAATTG TTTTCTTCTC ATCCAACATC ACTGTCTACT ATGTTATTGT ACTCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTTTCTT TATTTCTTTC TCCATCTTTC ACTCTTTCAT TGTGTGTGGT CCTTTGATTT TCCTTCTCTT
TATATCCCTC TTATCACTAT CTCCATTTCT GCATCCCTAG CTTGCATCCC AACACTGCTA TATTATAGCC TTTCTCTCCC
TCTCCATATT ATATAGCTTG TCTTTTATTT GTTACCCTCC ATACCAAACC AAAACCATTT TCAATCTTTT TCTCTATTCC
CTCTCCCACC TTCTTCTTCA TCATCATCTT CTTTACTTTC TTTCTTCACT TCTAGCTACT TTCAATAGTA ATAAACTCAA
CTGAAAGCTA CATACCAGCA AGTGCTCATA ATTAAGTACT AGACAATTAT ATTTCACCAA TTAAGGTCTA TCTAGCTATA
TTATATATAT ATATATAGAG AGAGAGAGAA AACATGTCTA GCAGAAGGTC AAGGCAACAA TCTGCATCAA CAAGGATCTC
AGATGACCAA ATCATCGACC TTGTTTCCAA GTTGCGTCAA CTTGTTCCTG AGATTCGTGA TAGACGCTCT GATAAGGTAT
CAGCATCTAA GGTCCTACAA GAGACCTGTA ACTACATCAG AAGCTTACAC AGAGAAGTGG ATGACTTGAG TGAAAGACTG
TCTCAGTTGT TGGCCACAAT TGATGCTGAT AGTCCTGAAG CTGCTATAAT TAGGAGCCTA ATTAACTAGT AATAATCATA
ATTAATAAGC AAGTCATGAT CTAATTTTCC TATATTCAAG GAGATATCAT ATATAAGAGT GTATTAGTTT CTTCTTCTTA
GGTGCCATAG AGTGCAGTTT GAGTTGCCTC CTTCCTTAGT ATATGGCAGG ATTGGTGCAC TTGTAATTTA AAGATTTTGT
AATAATCAAA ATTAAGGACT CTGTATTATG GCTATAGTGC TATATATTAA TATATGCATG CCACATTTAT AGATGGCCA

[show][hide][copy]CDS

>Vigan.11G041600.01
ATGTCTAGCA GAAGGTCAAG GCAACAATCT GCATCAACAA GGATCTCAGA TGACCAAATC ATCGACCTTG TTTCCAAGTT
GCGTCAACTT GTTCCTGAGA TTCGTGATAG ACGCTCTGAT AAGGTATCAG CATCTAAGGT CCTACAAGAG ACCTGTAACT
ACATCAGAAG CTTACACAGA GAAGTGGATG ACTTGAGTGA AAGACTGTCT CAGTTGTTGG CCACAATTGA TGCTGATAGT
CCTGAAGCTG CTATAATTAG GAGCCTAATT AACTAG

[show][hide][copy]PROTEIN

>Vigan.11G041600.01
MSSRRSRQQS ASTRISDDQI IDLVSKLRQL VPEIRDRRSD KVSASKVLQE TCNYIRSLHR EVDDLSERLS QLLATIDADS
PEAAIIRSLI N*