GBrowse Details

Vigan.11G041600.01

Basic Information:
Name: Vigan.11G041600.01
Multiple alignment
Variant Information
Position: Chr11:4648815..4651222 (- strand)
Length: 2408
Functional Information:
Description: Similar to Uncharacterized protein. [V7C1I4, Phaseolus vulgaris]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.10,13.48,4.87,3.05,0.09,2.64,5.05,8.29
Arabidopsis thaliana homolog: AT3G28857.1
Automatic updates:
Name: KT031128 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001250981 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305611 (LOC100305611), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:4648815..4649064 (- strand)
Length: 250
Type: three_prime_UTR
Position: Chr11:4649065..4649217 (- strand)
Length: 153
Type: CDS
Position: Chr11:4650507..4650629 (- strand)
Length: 123
Type: CDS
Position: Chr11:4650630..4651222 (- strand)
Length: 593
Type: five_prime_UTR


>Vigan.11G041600.01
AAGAAGAAAC CTAATCTTTC TCTCTCTCTC TCTCTCTTTT CTCTTACTCT TCATTTTAAT TAAACACCAT GTTTTTGACA
CTGCCTTCCC AATGCAATTG TTTTCTTCTC ATCCAACATC ACTGTCTACT ATGTTATTGT ACTCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTTTCTT TATTTCTTTC TCCATCTTTC ACTCTTTCAT TGTGTGTGGT CCTTTGATTT TCCTTCTCTT
TATATCCCTC TTATCACTAT CTCCATTTCT GCATCCCTAG CTTGCATCCC AACACTGCTA TATTATAGCC TTTCTCTCCC
TCTCCATATT ATATAGCTTG TCTTTTATTT GTTACCCTCC ATACCAAACC AAAACCATTT TCAATCTTTT TCTCTATTCC
CTCTCCCACC TTCTTCTTCA TCATCATCTT CTTTACTTTC TTTCTTCACT TCTAGCTACT TTCAATAGTA ATAAACTCAA
CTGAAAGCTA CATACCAGCA AGTGCTCATA ATTAAGTACT AGACAATTAT ATTTCACCAA TTAAGGTCTA TCTAGCTATA
TTATATATAT ATATATAGAG AGAGAGAGAA AACATGTCTA GCAGAAGGTC AAGGCAACAA TCTGCATCAA CAAGGATCTC
AGATGACCAA ATCATCGACC TTGTTTCCAA GTTGCGTCAA CTTGTTCCTG AGATTCGTGA TAGACGCTCT GATAAGGTAT
CAGCATCTAA GGTCCTACAA GAGACCTGTA ACTACATCAG AAGCTTACAC AGAGAAGTGG ATGACTTGAG TGAAAGACTG
TCTCAGTTGT TGGCCACAAT TGATGCTGAT AGTCCTGAAG CTGCTATAAT TAGGAGCCTA ATTAACTAGT AATAATCATA
ATTAATAAGC AAGTCATGAT CTAATTTTCC TATATTCAAG GAGATATCAT ATATAAGAGT GTATTAGTTT CTTCTTCTTA
GGTGCCATAG AGTGCAGTTT GAGTTGCCTC CTTCCTTAGT ATATGGCAGG ATTGGTGCAC TTGTAATTTA AAGATTTTGT
AATAATCAAA ATTAAGGACT CTGTATTATG GCTATAGTGC TATATATTAA TATATGCATG CCACATTTAT AGATGGCCA

>Vigan.11G041600.01
ATGTCTAGCA GAAGGTCAAG GCAACAATCT GCATCAACAA GGATCTCAGA TGACCAAATC ATCGACCTTG TTTCCAAGTT
GCGTCAACTT GTTCCTGAGA TTCGTGATAG ACGCTCTGAT AAGGTATCAG CATCTAAGGT CCTACAAGAG ACCTGTAACT
ACATCAGAAG CTTACACAGA GAAGTGGATG ACTTGAGTGA AAGACTGTCT CAGTTGTTGG CCACAATTGA TGCTGATAGT
CCTGAAGCTG CTATAATTAG GAGCCTAATT AACTAG

>Vigan.11G041600.01
MSSRRSRQQS ASTRISDDQI IDLVSKLRQL VPEIRDRRSD KVSASKVLQE TCNYIRSLHR EVDDLSERLS QLLATIDADS
PEAAIIRSLI N*