GBrowse Details

Vigan.11G051900.01

Basic Information:
Name: Vigan.11G051900.01
Multiple alignment
Variant Information
Position: Chr11:5896882..5899586 (- strand)
Length: 2705
Functional Information:
Description: Similar to lamin-like protein-like. [XP_004489434.1, Cicer arietinum]
GO: Molecular Function: copper ion binding (GO:0005507)
Molecular Function: electron carrier activity (GO:0009055)
InterPro: Plastocyanin-like (IPR003245)
Cupredoxin (IPR008972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.80,15.93,62.78,28.24,86.31,89.63,77.33,61.43
Arabidopsis thaliana homolog: AT5G15350.1
Automatic updates:
Name: NM_001250228 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cupredoxin domain-containing protein (LOC100305564), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:5896882..5897340 (- strand)
Length: 459
Type: three_prime_UTR
Position: Chr11:5897341..5897678 (- strand)
Length: 338
Type: CDS
Position: Chr11:5899215..5899407 (- strand)
Length: 193
Type: CDS
Position: Chr11:5899408..5899586 (- strand)
Length: 179
Type: five_prime_UTR


>Vigan.11G051900.01
TTAAATAAGA AAAAAAAGAC AACTTTCACA CAACAGATGC TATTTAAAAA ACCCCAAAAG AACCAAAAGG AGTCCTTAAA
AGGCCAAAAG AAAAGAACAT TGTGACAGAG TGTTCCAGAG TTTGTTGAAC TGTGAAGAGA AGAGAAGAGG GTAACTGCAA
CCAAGCAAGC GAAGCAGTGA TGGAGGATAG GATGAAGAAG ACGGTGCTTT CTCCACCCAT TGTGCTTCTC TTTCTAGCTT
TCTCACTTCT TCTCTTGCTT CCAGAAGCTT CGGCTACAAA GTTTAACGTT GGAGATAGCA AGTTTTGGAA CCCCAATATC
AACTACACTG AATGGGCCAA AGGAAAACAT TTCTACCTTG GAGATTGGCT GTATTTTGTT TACGACAGGA ACCAAGCTAG
CGTGCTGGAA GTGAACAAGA CCGATTATGA GACTTGTAAC TCTGATCATC CACTCACAAA CTGGACAAGG GGTGCAGGAA
GAGATGTGGT TCCTCTAAAT GTAACCAAAA CCTACTACAT CATCAGTGGC AAAGGGTTCT GCTTCAGTGG CATGAAGGTG
GCTGTTCATG TCGAAAAGCT ACCACCTCCA CCGAAAGCCG CCCCTGTAAA ATCCGGCGCA CCAACACTCT TCTCCACCGG
CCACATTCTT CTCATGCCGG TTGTTTTTGC CGTCGGAGCA GCGTGGGATG CATTCATTCA TTTCTGGTAG TGAATACCAC
ACCACCATTG AACAACATCA TTGGATAAGT GTTAATGTTG TGTTAGTTGA TTTTATTTTT TGTTGAAAGG CAATTGTTGT
CTGCATTGCA TGGTGATAGT AGTTGTTGGC CTCAAATGGG TCAGACAAAA GGGTGATTTT TCAGCAAGTT AGGTAGTGTC
TGTTTGATTT TCAAAATGTG TTGTGTTTCT GCATGATTAT GGTCAGAAAT ATGCCACAAA CTGGTTTAAA TTAATTTGAT
TTATTGGAGA ATTCAAATGC GGGAATTGCG GGAATTTGTA TCATGCTTTA GGACTGGTAG GACCTTCTGC ATGTGCTTGT
AGCATCATCA TCACTGCATT TTACTTTTCA TCAATGTTTT CATGTCTTAA ACTTAAATCC CATATTAATA CGTATTTAGA
AGACCCTTTT TCATATAATT AAGAAATTTT AATTTATCTT TGAAACTTA

>Vigan.11G051900.01
ATGGAGGATA GGATGAAGAA GACGGTGCTT TCTCCACCCA TTGTGCTTCT CTTTCTAGCT TTCTCACTTC TTCTCTTGCT
TCCAGAAGCT TCGGCTACAA AGTTTAACGT TGGAGATAGC AAGTTTTGGA ACCCCAATAT CAACTACACT GAATGGGCCA
AAGGAAAACA TTTCTACCTT GGAGATTGGC TGTATTTTGT TTACGACAGG AACCAAGCTA GCGTGCTGGA AGTGAACAAG
ACCGATTATG AGACTTGTAA CTCTGATCAT CCACTCACAA ACTGGACAAG GGGTGCAGGA AGAGATGTGG TTCCTCTAAA
TGTAACCAAA ACCTACTACA TCATCAGTGG CAAAGGGTTC TGCTTCAGTG GCATGAAGGT GGCTGTTCAT GTCGAAAAGC
TACCACCTCC ACCGAAAGCC GCCCCTGTAA AATCCGGCGC ACCAACACTC TTCTCCACCG GCCACATTCT TCTCATGCCG
GTTGTTTTTG CCGTCGGAGC AGCGTGGGAT GCATTCATTC ATTTCTGGTA G

>Vigan.11G051900.01
MEDRMKKTVL SPPIVLLFLA FSLLLLLPEA SATKFNVGDS KFWNPNINYT EWAKGKHFYL GDWLYFVYDR NQASVLEVNK
TDYETCNSDH PLTNWTRGAG RDVVPLNVTK TYYIISGKGF CFSGMKVAVH VEKLPPPPKA APVKSGAPTL FSTGHILLMP
VVFAVGAAWD AFIHFW*